Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00050 ATGGCTGAATCAACGGCGAACAATCAGAGCAGCAGCAACAACCCCGGGAACGGAGAACAGGATGATGACTACATGGGTGACCTCTCACGCTTCCTTCCATCTGAGCCTCTTCCAAAGCCTTCCTCCAAAAAGATTTCTGGCAAGAAAGACCCTCCGATCAGCTCTTCCAAGAATAAGCTAAAATCACTTAGCTGGCAAGAACGGCGAAAACTTGAAAGAGAAAGAAAGCAGCAAGAAGAGGATGAACAAACATTGGCAAGTGTGGAAGCTCCAATACCACAATCCAATATTGGGTTTAAACTGCTCAAACAAATGGGTTATACACCTGGTGCTGCCCTTGGCAAACAGGGTTCGGGTAGGGCTGATCCAGTGGGGATTGAAATCCGGCGATCACGAGCTGGTATTGGCTTAGATGATCCTCACAAGGAGAAGAGGAAAAAGGAGGAAATTGTGTCTGAGAGAAAAAAGAGGAAAGAGGAGGATCTAATGCAAGACTTTGGGTTGAGACAGAAGTCGCGATGGCAGAGTAAGAGGGTTGTAGTCAATTTCCATAAGGCAAAGGCTGCCCTTGATCAATTAGAGAATAGAGAAGTCATTGAGCCTGAAAAGAATGAGGACGATGAAGAGGATGAAGATGAGGAAGAGGAAGAAATAACAGAAGAGGATTTGCAAGATGTTTTGATGAAACTGAGGGATGATCACAATTATTGCCTCTTTTGTGGATGCAAGTATGAATCAAAGGATGCTCTCTTGGCCAACTGCCCCGGAACCAATGAAGATGATCATTAA 789 0.4499 MAESTANNQSSSNNPGNGEQDDDYMGDLSRFLPSEPLPKPSSKKISGKKDPPISSSKNKLKSLSWQERRKLERERKQQEEDEQTLASVEAPIPQSNIGFKLLKQMGYTPGAALGKQGSGRADPVGIEIRRSRAGIGLDDPHKEKRKKEEIVSERKKRKEEDLMQDFGLRQKSRWQSKRVVVNFHKAKAALDQLENREVIEPEKNEDDEEDEDEEEEEITEEDLQDVLMKLRDDHNYCLFCGCKYESKDALLANCPGTNEDDH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00050 262 SMART G-patch_5 92 138 IPR000467 GO:0003676
Stsc4g00050 262 SMART DUF4187_2 208 262 IPR025239 -
Stsc4g00050 262 MobiDBLite consensus disorder prediction 192 222 - -
Stsc4g00050 262 Coils Coil 68 88 - -
Stsc4g00050 262 MobiDBLite consensus disorder prediction 62 83 - -
Stsc4g00050 262 MobiDBLite consensus disorder prediction 201 222 - -
Stsc4g00050 262 Pfam G-patch domain 94 137 IPR000467 GO:0003676
Stsc4g00050 262 MobiDBLite consensus disorder prediction 1 19 - -
Stsc4g00050 262 MobiDBLite consensus disorder prediction 131 163 - -
Stsc4g00050 262 MobiDBLite consensus disorder prediction 1 95 - -
Stsc4g00050 262 MobiDBLite consensus disorder prediction 132 163 - -
Stsc4g00050 262 Coils Coil 204 224 - -
Stsc4g00050 262 Pfam Domain of unknown function (DUF4187) 209 262 IPR025239 -
Stsc4g00050 262 PANTHER UNCHARACTERIZED 19 262 IPR039249 -
Stsc4g00050 262 ProSiteProfiles G-patch domain profile. 94 140 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00050 Stsc-Chr4 375942 378628 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00050 86 136 C2H2 Transcription Factor Family AT5G26610 45.098 3.49e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00050 - - gmx:100777380 353.214