Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00049 ATGGGGAATGAAAACTCAACAGGGTCAAGCGCAAGTGATGAAACACAAAATTTTCCAAGGAAGAAGCTATGGAGACCCCCAACAAGAGCAGAGGAGGTGGTGTACTCAGAGCAACGCCGTAAGAAACCGCTATCGAACGACGACGCTTTCAACAGTTTCATTAAACGTGGTAAGCATAAGTTCAGGAGCATGGCAACGTTTGCCACTCGCCGTAGGGAGGAGGATATTAGCCACACTTCGCCGGACGTGGCTAATAATCCTATTCAAGCTGTCAAGAACAGTAGTGTTAACAATAACGATGATCAGAAAGACAACAACTTCTCAGATTTTATCAAGCATACAAAGAAGAAGTTCAGAACTACATCAATTGTTGGAAGGAATAGCTCTGTCAAAAGAGGAAACTTACCTTCAAGTGCAAGCAAGAGTTTCAAGCCCAGTGATGAAGAACTCATACAAGATTTCCTTCTTAACAAGATCAACGGGAAGCCTCTACCGAGCCACGGAACCATTCTTGAATGCCAATTGTACGGCATTGAGAAGAATCCATGGGAGATCTGGAAAGAGAACATTGGAGACTCCTACGATGGAAAGGACCTTTATTTCTTCACAATGCTGAAGAGGAAGTCGCCGAGGAGCACGCGGATGGTTCGAACCATCGGGTTGGGTTCTTGGGAAGCTGAAGACACAGGGAAAAAGATTCTGTCCAGCAAGACTAATGAGCTCATTGGACTGAGGAAGCGTTATCGGTTTGAGAAGAGTCATACTAACCATGATGGTGCATGGATCTTGCATGAATACATCATCCATTCTTCTTTGTTGCCAAATCCTTCCTTTGAGAATAATTATGTTCTATGCAGATTTAGAAAGAACAAAGATGCTGATGGACAGCCTCATCAACAACCAGAGAAAAGAGTTTCCAAGAAAAGGAAGAGGGTGGTTCTTGAAACCGAGGCTACTGATAGAGAACCTAATGTCAATGATAATGCTGGGATAGGAGAATCTGCTGAACAATCTATGAATAGAGATGAAAGGATTGAGATTCAGAATGAACCTACAAGCCAAACAGATAATAATGGAGATGAAAAGATGAATAAGATTCAGCAAGAACTAATAACAAAACCATCAGAGAATAATGGAGATGAAAAGATGGATAGGATTCATCAGCAAGAACTAACAAACCCATTAGAAAATAATGGAGATGAAATAATGGTTAAGGCTGTTGAAACAAAAAATGGAATTGAGCAATATTGTGAGGAAGAGGGAGAGGACGACGATGACAATAATCATGACGACAACGATAACGATGACGGCAGTGACAATGATAATAATGAGTCATGGGCAGAGGCTTTTGCAAAACAATTGATAGAAATCAACAAAGACTGGTTCATACCAAATAATGATGTTCCCATGATTCCTAATATATTTCCCAATTACTTGTCTCCAAAAAGATTTAAATAA 1458 0.4067 MGNENSTGSSASDETQNFPRKKLWRPPTRAEEVVYSEQRRKKPLSNDDAFNSFIKRGKHKFRSMATFATRRREEDISHTSPDVANNPIQAVKNSSVNNNDDQKDNNFSDFIKHTKKKFRTTSIVGRNSSVKRGNLPSSASKSFKPSDEELIQDFLLNKINGKPLPSHGTILECQLYGIEKNPWEIWKENIGDSYDGKDLYFFTMLKRKSPRSTRMVRTIGLGSWEAEDTGKKILSSKTNELIGLRKRYRFEKSHTNHDGAWILHEYIIHSSLLPNPSFENNYVLCRFRKNKDADGQPHQQPEKRVSKKRKRVVLETEATDREPNVNDNAGIGESAEQSMNRDERIEIQNEPTSQTDNNGDEKMNKIQQELITKPSENNGDEKMDRIHQQELTNPLENNGDEIMVKAVETKNGIEQYCEEEGEDDDDNNHDDNDNDDGSDNDNNESWAEAFAKQLIEINKDWFIPNNDVPMIPNIFPNYLSPKRFK 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00049 485 MobiDBLite consensus disorder prediction 419 445 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 1 17 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 1 49 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 72 105 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 292 322 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 419 442 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 292 342 - -
Stsc4g00049 485 ProSiteProfiles NAC domain profile. 137 290 IPR003441 GO:0003677|GO:0006355
Stsc4g00049 485 MobiDBLite consensus disorder prediction 18 46 - -
Stsc4g00049 485 MobiDBLite consensus disorder prediction 80 104 - -
Stsc4g00049 485 PANTHER NAC TRANSCRIPTION FACTOR 56 142 352 - -
Stsc4g00049 485 Pfam No apical meristem (NAM) protein 142 266 IPR003441 GO:0003677|GO:0006355
Stsc4g00049 485 Gene3D NAC domain 146 294 IPR036093 GO:0003677|GO:0006355
Stsc4g00049 485 SUPERFAMILY NAC domain 140 289 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00049 Stsc-Chr4 367931 375378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00049 143 293 NAC Transcription Factor Family AT2G24430 33.766 2.66e-17 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc4g00049 NAM 9.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00049 - - ahf:112730219 377.481