Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00038 ATGGAAGGTCGCAGGAGGATAACACTTTATGATCAAATGACAGCTAGCAAAACCACCTCTCTAGCAGATTTGATCCTTCACGACAGTTTCACCGCCGTATCCTCCGCCGCCGCCGCGGCAGACTCCACCGCCGCCACCGCCGCCGTCGATGCCGAAAGCTACGAATTGAACCAAAGCCGAACCCTCGTAGATATCCTTCGCGAAGATGAACACAACAATAACAACACAACGGACCGCAAATCTCGGAAATCCTTCAGTTTCATGGACAAGCTTAGATTCAAGCTTGCACTCAATTCAAGATCAAATTACAGTAGTGAAACTGAAAACAATTCCGCTAACAACAGCAACAACAACAATCACATTCAAACAAACTTGTCCGAGTTGCAAGCGCGGATCGATCCGGACGAGTTGACTCAGCAAGACGCGACGACTCAGCGATCGCAAAACGACGCCGTTGCTACCACCGCCTCCGCAGACCGTGAAATCCCGGCGGAAGTTGCGGTGGCTGAACCGGTCGGCGTGTCACTGATGGATTTGTTGGAAGAAACGGAGATGGAAACGGGATTCGAAGTTTCGAGTAACAGAATGAGCGATGCTGATTTTGAAGATGCGATTGAATGCGAAGTAGAAGAAGAAAAGTGCGAGGAAGAAGGGGCGAGTATTGTGGAACGTAACTGCTGCGTGTGCATGGTGAGGCATAGAGGCGCGGCTTTTATACCCTGCGGGCACACGTTCTGCAGGTTGTGCTCCAGGGAGGTTTGGGTCAACAGAGGCAACTGCCCTCTCTGCAATAATTTCATTTTGGAAATTCTTGATATTTTCTGA 825 0.4994 MEGRRRITLYDQMTASKTTSLADLILHDSFTAVSSAAAAADSTAATAAVDAESYELNQSRTLVDILREDEHNNNNTTDRKSRKSFSFMDKLRFKLALNSRSNYSSETENNSANNSNNNNHIQTNLSELQARIDPDELTQQDATTQRSQNDAVATTASADREIPAEVAVAEPVGVSLMDLLEETEMETGFEVSSNRMSDADFEDAIECEVEEEKCEEEGASIVERNCCVCMVRHRGAAFIPCGHTFCRLCSREVWVNRGNCPLCNNFILEILDIF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00038 274 SMART ring_2 226 263 IPR001841 -
Stsc4g00038 274 ProSiteProfiles Zinc finger RING-type profile. 226 264 IPR001841 -
Stsc4g00038 274 MobiDBLite consensus disorder prediction 138 157 - -
Stsc4g00038 274 Pfam Zinc finger, C3HC4 type (RING finger) 223 267 - -
Stsc4g00038 274 CDD RING-HC 226 263 - -
Stsc4g00038 274 PANTHER OS01G0917900 PROTEIN 4 274 - -
Stsc4g00038 274 MobiDBLite consensus disorder prediction 138 155 - -
Stsc4g00038 274 SUPERFAMILY RING/U-box 225 270 - -
Stsc4g00038 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 274 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00038 Stsc-Chr4 296934 298218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00038 1 274 C3H Transcription Factor Family AT3G25030 35.395 3.19e-37 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00038 - - gmx:100802736 186.422