Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00032 ATGGCTTTTCTAACTCATCATAATCACACCAATAATTCCTTCTCATTCATAGCTACTTTGCTGATATTCTGCAGCAGCATTCATTTGTGTTTAAGCTCTGTAAACGACACAATCACATCAGCCATATCCATCAATGATAATCAAACAATAACCTCAAACAACACTGACTTCAACCTCGGATTCTTCAGCCCTCCAAACTCAACAGACCGCTACGCCGCCATATGGTACCTCTCCAGCTCCAACATCATATGGATTGCAAACAGAGACCGACCCCTCAAAGATTCTTCAGGGGTTATCAAGATTCACAAGGACGGAAACCTCGTAGTAATGGACGGAAAAAACCGCATACTCTGGTCAACAAACATCATATTTTCAACACAGAATGTTACAAGAAATTCAAGTGCTCAGCTTCAAGATAACGGTAAGCTTGTTCTTAGTGATGATAACACTGGAGAAACGGCTTGGGACAGTTTCACCCACCCTGCGGACTCCGCCGTGCCGACGATGAAAATTGCGGCGAACAGATTCACAGGTAAGAAAATCGCGTATGTTTCTTGGAAGTCCCCGGTAGATCCTTCTTCCGGGGACTTCACGGGGAGTCTGGAGCGGTTGGCTGCTCCAGAGGTTTTCTTCTGGTACAAGAAAACCCGGCCGTATTGGCGAACTGGTCCGTGGAACGGCCGGGTTTTCCTTGGAGCTCCGAGGATGCTGACAGAGTATCTGTACGGGTGGCGTCTGGACCATGATCCAGACGGGACGGATTATCTAACGTACAGTTTCGCGAATCCGGCCGAATTCGGGATACTCTCGTTGACTTATGATGGAAAACTTAGACTGGCAAGATTCTTGAATAAGAAGAATTACGTGACGTTTGAGGTTTCTCAGAATGAGTGTGATTTTTACGGCACGTGTGGGGCTTTCGGAAACTGTGATCCGTCTAGCAAACCGATTTGTAGCTGTTTCGAAGGGTTTGAGCCGAGGAATTTGCAAGAATGGAGTATGAAGAGTTGGACTAGTGGTTGTGTGAGGACGAAAGAGGCAGAGCTTCAGTGTGGTAGGTTGAAAAATTTGAAGAATAGTGATAATAGTAGTAGTAGTACTACTAATAATGGTGGAGTTGAAGTGCAACAAGATGGGTTTAAGGTGTTTAATAACATGAAAGTGCCGGATTTTGCTGAGAGATCTGATGCTAACTTGGACAAGTGCAGAACGGATTGTTTGGGAAATTGTTCTTGTTTGGCTTATGCTTATGATTCTTATATTGGATGCATGTTTTGGGTCAGTGACTTGATTGACTTGCAGAAATTCCCCTATGGTGGAGTTGATCTCTTCCTTCGTGTTCCTTATTCTCAGCTTATTGGACTAATTGCATTAGCGATTTGTTCATACATTTTGTGGCGAAAATGGACTGCTGCTAAACAAACTAGAACATTGCCCCAAAAGAAGACTACTGTTGGGGAGCAAAAACAAATGAAACTTGATGAACTACCGTTGTTTGAATTTGAAAAGCTTGCAATTGCTACAAACAACTTTCATACTAGCAATCTGCTTGGGAAGGGAGGATTTGGTCCAGTATATAAGGGACAATTGGAAGATGGACAAGAAATCGCAGTGAAAAGATTATCCAAAGCATCTGGCCAAGGGGTGGAAGAATTTATGAATGAAGTCGTGGTTATATCGAAACTTCAACACCGCAATCTTGTTAGACTACTTGGTTGTTGCATCGAACGCGACGAACAGATGTTGGTCTATGAGTTCATGCCAAACAAAAGTTTGGATGCTTTTCTTTTTGATCCACAACAAAGAAAAGTCTTAGATTGGAAAAAACGTTCCAAAATAATTGAAGGAATAGCTCGTGGTATACTTTATCTTCACAGAGATTCAAGACTTAGAATCATACACAGAGATCTTAAGGCAAGTAACATTTTGCTGGATGATGAAATGAATCCAAAAATATCGGATTTTGGTTTAGCTAGAATTTTTAGAGGAGGCGAAGATGATGAAGCTAATACAAAAAGAGTCGTTGGAACATACGGCTACATGCCACCTGAATATGCAATGGAAGGGCTTTTTTCAGAGAAATCAGATGTTTACAGTTTTGGAGTTCTGTTACTTGAGATTGTGAGCGGGCGAAGAAACACCAGCTTTTATAACCATGAGCAATCACTAAGCCTTGTTGGATATGCATGGAAACTATGGAATGAAAAAAACATTACATCTTTGATAGATCCAGAGATAGGGGATTCATGCTTTGAGAAAAGCATTTTGAGGTGCATACACATAGGGCTTTTATGTGTGCAAGAATTGACAAAAGAAAGACCAACTATATCCACTGTGGTTCTTATGCTAATAAGTGAGATTACACATCTTCCTCCACCAGGGCAAGTTGCATTTGTTCACAAACAAAATATGCACAGTTCTGAATCCTCTCAAAAAACTCACCAGTCCAACTCAAACAACAATGTAACTCTTACTGAATTAGAAGGGAGATAA 2493 0.4148 MAFLTHHNHTNNSFSFIATLLIFCSSIHLCLSSVNDTITSAISINDNQTITSNNTDFNLGFFSPPNSTDRYAAIWYLSSSNIIWIANRDRPLKDSSGVIKIHKDGNLVVMDGKNRILWSTNIIFSTQNVTRNSSAQLQDNGKLVLSDDNTGETAWDSFTHPADSAVPTMKIAANRFTGKKIAYVSWKSPVDPSSGDFTGSLERLAAPEVFFWYKKTRPYWRTGPWNGRVFLGAPRMLTEYLYGWRLDHDPDGTDYLTYSFANPAEFGILSLTYDGKLRLARFLNKKNYVTFEVSQNECDFYGTCGAFGNCDPSSKPICSCFEGFEPRNLQEWSMKSWTSGCVRTKEAELQCGRLKNLKNSDNSSSSTTNNGGVEVQQDGFKVFNNMKVPDFAERSDANLDKCRTDCLGNCSCLAYAYDSYIGCMFWVSDLIDLQKFPYGGVDLFLRVPYSQLIGLIALAICSYILWRKWTAAKQTRTLPQKKTTVGEQKQMKLDELPLFEFEKLAIATNNFHTSNLLGKGGFGPVYKGQLEDGQEIAVKRLSKASGQGVEEFMNEVVVISKLQHRNLVRLLGCCIERDEQMLVYEFMPNKSLDAFLFDPQQRKVLDWKKRSKIIEGIARGILYLHRDSRLRIIHRDLKASNILLDDEMNPKISDFGLARIFRGGEDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFYNHEQSLSLVGYAWKLWNEKNITSLIDPEIGDSCFEKSILRCIHIGLLCVQELTKERPTISTVVLMLISEITHLPPPGQVAFVHKQNMHSSESSQKTHQSNSNNNVTLTELEGR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00032 830 CDD PAN_AP_plant 376 448 - -
Stsc4g00032 830 CDD STKc_IRAK 517 783 - -
Stsc4g00032 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 474 586 - -
Stsc4g00032 830 Pfam PAN-like domain 376 433 IPR003609 -
Stsc4g00032 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 20 774 - -
Stsc4g00032 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 31 158 - -
Stsc4g00032 830 SMART ntp_6 375 447 IPR003609 -
Stsc4g00032 830 Pfam S-locus glycoprotein domain 220 327 IPR000858 GO:0048544
Stsc4g00032 830 ProSiteProfiles PAN/Apple domain profile. 375 448 IPR003609 -
Stsc4g00032 830 Pfam D-mannose binding lectin 82 187 IPR001480 -
Stsc4g00032 830 SMART blect_4 41 161 IPR001480 -
Stsc4g00032 830 CDD B_lectin 43 161 IPR001480 -
Stsc4g00032 830 SMART serkin_6 511 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc4g00032 830 SUPERFAMILY Protein kinase-like (PK-like) 496 812 IPR011009 -
Stsc4g00032 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Stsc4g00032 830 FunFam Liguleless narrow1 587 791 - -
Stsc4g00032 830 Pfam Protein tyrosine and serine/threonine kinase 513 779 IPR001245 GO:0004672|GO:0006468
Stsc4g00032 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 192 IPR036426 -
Stsc4g00032 830 Gene3D - 30 160 IPR036426 -
Stsc4g00032 830 ProSiteProfiles Protein kinase domain profile. 511 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc4g00032 830 Gene3D Transferase(Phosphotransferase) domain 1 587 790 - -
Stsc4g00032 830 MobiDBLite consensus disorder prediction 802 830 - -
Stsc4g00032 830 PIRSF SRK 7 830 IPR024171 GO:0004674
Stsc4g00032 830 ProSiteProfiles Bulb-type lectin domain profile. 35 158 IPR001480 -
Stsc4g00032 830 Gene3D Phosphorylase Kinase; domain 1 485 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00032 Stsc-Chr4 247877 253592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00032 439 813 Receptor kinase-like Gene Family AT4G23190 51.697 1.29e-126 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc4g00032 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00032 - - gmx:100786846 1199.11