Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00030 ATGACTACTCCAGCATCAACCTCAACCTCAAGAGTCGCAGCAGAAAAGCAAGCCGCATTGCAAAAGCTGCCTGATTCTGCAGCAAATTTATTGAGCGATGAGATTAAACCACTTTCAGGAAATCCATTCTTTCATGTAGTTCTCTCAAAATCACATCTTCATCGTAGTTGTCTCATGGGACCATCAAAGGACTTAGTAGATATTCTTCCTTCTGTCGAAGTTTTTACCGTTCTCAAGTGTAAAGGCAAGAGCTGGGACATGGCATATCGTGGACATGCTCCGAATCGCAAGTTCTTCGATGGAGGCTGGAGAAAGTTTGCCAATGATAACAATTTGGTGGAGGGAGATGCTTGTGTTTTTGAGCTCATGGAAAACACTGATGAGAAAATCATCTTTGAAGTTCAAATTCTCAAAGGTGATCTCCCTCAAGTGTTATCTGAAAGGGCAAAAAGTACATGGTAA 462 0.4177 MTTPASTSTSRVAAEKQAALQKLPDSAANLLSDEIKPLSGNPFFHVVLSKSHLHRSCLMGPSKDLVDILPSVEVFTVLKCKGKSWDMAYRGHAPNRKFFDGGWRKFANDNNLVEGDACVFELMENTDEKIIFEVQILKGDLPQVLSERAKSTW 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00030 153 SMART B3_2 44 140 IPR003340 GO:0003677
Stsc4g00030 153 SUPERFAMILY DNA-binding pseudobarrel domain 39 137 IPR015300 -
Stsc4g00030 153 CDD B3_DNA 42 138 IPR003340 GO:0003677
Stsc4g00030 153 Gene3D - 23 139 IPR015300 -
Stsc4g00030 153 ProSiteProfiles B3 DNA-binding domain profile. 81 140 IPR003340 GO:0003677
Stsc4g00030 153 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 12 143 IPR044837 -
Stsc4g00030 153 Pfam B3 DNA binding domain 44 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00030 Stsc-Chr4 240151 243044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00030 41 138 REM Transcription Factor Family AT1G49480 37.374 8.74e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc4g00030 B3 2.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00030 - - adu:107474771 228.409