Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00029 ATGACTACTCCAGCATCAACCTCAACCTCAAGAGTCGCAGCAGAAAAGCAAGCCGCATTGCAAAAGCTGCCTGATTCTGCAGCAAATTTATTGAGCGATGAGATTAAACCACTTTCAGGAAATCCATTCTTTCATGTAGTTCTCTCAAAATCACATCTTCATCGTAGTTGTCTCATGGGACCATCAAAGGACTTAGTAGATATTCTTCCTTCTGTCGAAGTTTTTACCGTTCTCAAGTGTAAAGGCAAGAGCTGGGACATGGCATATCGTGGACATGCTCCGAATCGCAAGTTCTTCGATGGAGGCTGGAGAAAGTTTGCCAATGATAACAATTTGGTGGAGGGAGATGCTTGTGTTTTTGAGCTCATGGAAAACACTGATGAGAAAATCATCTTTGAAGTTCAAATTCTCAAAGGTGATCTCCCTCAAGTGTTATCTGAAAGGGCAAAAAGTACATGTTGCGATGGTCAACAAGATGGAAACTTCGAGAAAAATCTTCAAATTGGGATGTCAACTGACCATATCCCGAATTGA 534 0.4157 MTTPASTSTSRVAAEKQAALQKLPDSAANLLSDEIKPLSGNPFFHVVLSKSHLHRSCLMGPSKDLVDILPSVEVFTVLKCKGKSWDMAYRGHAPNRKFFDGGWRKFANDNNLVEGDACVFELMENTDEKIIFEVQILKGDLPQVLSERAKSTCCDGQQDGNFEKNLQIGMSTDHIPN 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00029 177 SMART B3_2 44 140 IPR003340 GO:0003677
Stsc4g00029 177 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 143 IPR044837 -
Stsc4g00029 177 SUPERFAMILY DNA-binding pseudobarrel domain 39 137 IPR015300 -
Stsc4g00029 177 CDD B3_DNA 42 138 IPR003340 GO:0003677
Stsc4g00029 177 ProSiteProfiles B3 DNA-binding domain profile. 81 140 IPR003340 GO:0003677
Stsc4g00029 177 Gene3D - 24 139 IPR015300 -
Stsc4g00029 177 Pfam B3 DNA binding domain 44 132 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00029 Stsc-Chr4 240031 243044 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00029 41 138 REM Transcription Factor Family AT1G49480 37.374 1.08e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc4g00029 B3 3.9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00029 - - adu:107474771 228.409