Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00024 ATGGCTTCGAGTGAGATTCTGACATCTGCTGCAACAAACCATGAAGTTTTGACTGAAGCGTCGAAGATGAAGGAGAGTAAGGAAGAAGAAGAAGAAGAAAAGAAGGAGATGAATCGGAAGGAGAAACGGAAGGCATTAAAGAAAATGAAAAGGAAGCAGATCAGGAAGGAGATTGCAATTACGGAGCGGGTAGAGGAGGAGGCTCGCCTCAACGATCCCGAAGAGCAGAGGAGGATGCAACTCCTGGAGGAGCAGGAGGCTGAGAGGATGGAGAGAGACAGGAAGCTTTTTGAGGAAAGAGAGAGGGCTTGGATGGAGTCACAGCAGAGGATTCAGCAGGAGCAGGAGCAACAACAGCAACAGATAGCCCTTCTTGAAGAATCACAGTCGGCACCCAATGGTAATGTTAGCAACAATGATGATGATGATGATGATCAATGGGAATATGTTGAGGAAGGGCCTCCTGAGATTATCTGGCAAGGAAATGAGATTATCCTCAAGAGGAACAAAGTGAGGGTCAGGGTTTCAAATAAGGAACCAAATCAAAATCAGCATGTTGATGATGCTGATAGACCTACCTCAAATCCTTTACCCCCAGAATGTCACTCAAATTCATCCGCTCATCTGGTGCTGGAGAATGTTGCACAACAAGTACCCAATTTTGGAACAGAACAGGACAAAGCTCATTGCCCTTTTCATTTAAAGACTGGAGCATGTCGATTTGGTCAACGTTGTAGCAGAGTCCACTTTTACCCTGATAAATCATGCACCCTTCTGATGAAAAACATGTATAGTGGTCCTGGCCTTGCTTGGGATCAAGATGAAGGCCTTGAGTACACGGATGAGGAGGTTGAACGCTGTTTTGAAGAATTTTATGATGATGTTCATACAGAGTTCCAGAAATTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGCGCATTTCACTTGCGAGGAAATGTCTACGTGCATTATAAATTTTTGGACTCTGCTCTGCTTGCCTACAACACTATTAATGGGCGCTACTTTGCTGGGAAACAGGTAACTTGTAACTTCGTTAGTTTGACAAGATGGAAGGGTGCCATATGTGGCGAGTATATGAAGTCAGGTTACAAGACGTGCTCCCATGGAACAGCGTGCAATTTTATACACTGTTTCCGTAATCCTGGTGGGGACTATGAATGGGCTGATTCTGATCGACCACCCCCAAAATATTGGGTGAAAAGGATGGCAGCATTATTTGGTTATTCTGATGATTATGAGGCTTTAGCAGAGCAAGAAAATGTGAGTTTCCGAAAGAATACCGGCGAGATGTCAAAATCAGATTCTTTCAGTGTGAGAGTCTTTTACAGGTATCACTCAAGTAGATCAAGATCTAGGGAGCGGGATCAGTTGAAAAGTTATTCTAGTAGAAGAAAACACGGAGACGAACGAAGGCAAAGAACTCCTGATGAGGGATCGAATGCCAATTCAAAAGATAATCATAAAATTAGGCACAAAACTCGGGTTTCTGATTCCAATAGGGAATTGTTGGGAAAAGACGAAAATAGGGAAGATCACCATAAACATTCCAGAAAATGCTCGTTACATAGTGACAAGGATGACAGTATCAGAAGCCATGATGAGGATTTTGATACAGTTTTGGCTCGAACTGGTAAGGACGATGAAGTAGAACATGGAAAAGAACCAAGAATCTCTAAGAAGGGGAAGAGAGATAGAAGGGATTGGATTTATGAGTCCGAATCAGCGCTCCATACCAGTAGAAGGAAAAGCTCACGTCATCATGGTAGGGACAATAGAGCTGGTGAAGCTGAATCCAATAAAGATTTGTTTGATCAAGGAGACTTGGAACCCCATGATAGCTCTCGGAAAAGCTCGAGACACAAGAGGCCTGGTCATCGAGGAGACAAGAAGGACTATGATAGTGAACATGATGAAGTTGATGGAGATTGGTCGTGGAGGGAGAGGCACAGAAGATCTGGCTATCGAGATGACATTAAAGACCATGAAAATGAACGTGAAGAAGCCGATAGAAGTTGGTCACTATCACGGTGGGATAGTGATGGACATCATCACAAAAAGAAGAGCTCAGGGCACCACTCACCGGACCGTGATGGAGACATCTGA 2130 0.4376 MASSEILTSAATNHEVLTEASKMKESKEEEEEEKKEMNRKEKRKALKKMKRKQIRKEIAITERVEEEARLNDPEEQRRMQLLEEQEAERMERDRKLFEERERAWMESQQRIQQEQEQQQQQIALLEESQSAPNGNVSNNDDDDDDQWEYVEEGPPEIIWQGNEIILKRNKVRVRVSNKEPNQNQHVDDADRPTSNPLPPECHSNSSAHLVLENVAQQVPNFGTEQDKAHCPFHLKTGACRFGQRCSRVHFYPDKSCTLLMKNMYSGPGLAWDQDEGLEYTDEEVERCFEEFYDDVHTEFQKFGEIVNFKVCKNGAFHLRGNVYVHYKFLDSALLAYNTINGRYFAGKQVTCNFVSLTRWKGAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDRPPPKYWVKRMAALFGYSDDYEALAEQENVSFRKNTGEMSKSDSFSVRVFYRYHSSRSRSRERDQLKSYSSRRKHGDERRQRTPDEGSNANSKDNHKIRHKTRVSDSNRELLGKDENREDHHKHSRKCSLHSDKDDSIRSHDEDFDTVLARTGKDDEVEHGKEPRISKKGKRDRRDWIYESESALHTSRRKSSRHHGRDNRAGEAESNKDLFDQGDLEPHDSSRKSSRHKRPGHRGDKKDYDSEHDEVDGDWSWRERHRRSGYRDDIKDHENEREEADRSWSLSRWDSDGHHHKKKSSGHHSPDRDGDI 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00024 709 Coils Coil 660 680 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 18 40 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 128 148 - -
Stsc4g00024 709 FunFam Zinc finger CCCH domain-containing protein 5 257 354 - -
Stsc4g00024 709 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 356 IPR000504 GO:0003723
Stsc4g00024 709 SMART c3hfinal6 225 251 IPR000571 GO:0046872
Stsc4g00024 709 SMART c3hfinal6 358 387 IPR000571 GO:0046872
Stsc4g00024 709 MobiDBLite consensus disorder prediction 458 523 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 1 93 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 635 693 - -
Stsc4g00024 709 ProSiteProfiles Zinc finger C3H1-type profile. 224 252 IPR000571 GO:0046872
Stsc4g00024 709 Coils Coil 13 52 - -
Stsc4g00024 709 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 229 249 IPR000571 GO:0046872
Stsc4g00024 709 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 359 386 IPR000571 GO:0046872
Stsc4g00024 709 SUPERFAMILY RNA-binding domain, RBD 288 356 IPR035979 GO:0003676
Stsc4g00024 709 MobiDBLite consensus disorder prediction 529 588 - -
Stsc4g00024 709 Coils Coil 108 128 - -
Stsc4g00024 709 SMART rrm2_1 269 352 IPR003954 GO:0003676
Stsc4g00024 709 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 218 588 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc4g00024 709 ProSiteProfiles Zinc finger C3H1-type profile. 358 388 IPR000571 GO:0046872
Stsc4g00024 709 MobiDBLite consensus disorder prediction 597 625 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 1 16 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 458 709 - -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 176 203 - -
Stsc4g00024 709 Gene3D - 255 354 IPR012677 -
Stsc4g00024 709 MobiDBLite consensus disorder prediction 55 93 - -
Stsc4g00024 709 PRINTS U2 auxiliary factor small subunit signature 249 269 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc4g00024 709 PRINTS U2 auxiliary factor small subunit signature 313 335 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc4g00024 709 PRINTS U2 auxiliary factor small subunit signature 378 390 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc4g00024 709 PRINTS U2 auxiliary factor small subunit signature 285 300 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc4g00024 709 PRINTS U2 auxiliary factor small subunit signature 340 364 IPR009145 GO:0000398|GO:0003723|GO:0089701
Stsc4g00024 709 PRINTS U2 auxiliary factor small subunit signature 230 249 IPR009145 GO:0000398|GO:0003723|GO:0089701
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00024 Stsc-Chr4 205572 212018 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc4g00024 zf-CCCH 2.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00024 K24273 - gmx:100789091 653.669