Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4g00010 ATGGAACTGAGGGATGCATGTGCTTGCTTCTTTCTGTTTTGTAGCTTCTGGTTTGTCACTTTCTCTGAACAAGATGGTTTCTTGAGTCTTTCTTGTGGTGGAAGAAAAAGTTTCAATGATTCAAATAACATTTCATGGGTTCCAGACACAAACTACATAACCACAGGCAAGACTACAACCATTAATTACACTGATCATGGTTCAATCTCAAAGAATGTCTCAGCGCGATTCTTCTCGAATTCCAGACGGCGAAAATGTTACAGAATACCAATGAACAATGCAACAAATTTGGTTCTTGTTAGAGCAAATTTCATGTACAAAAATTATGATGGACTTGCAGTGCCTCCTAGATTCTCTGTTTCTGTTGGAACATCAATTGCTGCCACTGTTGATCTTTCGGAACATGATCCATGGATAGAGGAGTTCCTATGGACAGTTAATAAGGACACATTGCCATTCTGCTTGGTTTCAGTTCCGGATGGCGGCTCGCCGGTGATTTCTTCCCTTGAAATCCGGTCGCTTCCGCGAGCGGCCTACATGAATGCTATGGCTGATTTTCCAAATAAGTTGCTAAGGAAGAGCTACCGGATCGATTGCGGCTACACCGGGGATTCTATCCGGTACCCTTTGGATCCATTTGATAGAATATGGGATTCTGATACAAGATTCACACCCTTTCATGCTACAACTGAATTCAGCATTCAACTTGGATTATTCAATCCAACTAATAATCTCAAGGAGCAACCACCAATAACTGTTCTTCAAACTGGTCGAATTCTGGCGCGAAAGAATACTCTAACATATAACCTCCCTCTTGATGATGATGATGATGAATTTGGAGACTACTACATCATCCTTTACTTTGCTGGAATTCTTCCTGTGTTGCCATCATTTGATGTTCTTATAAATGGAGATGTTGTGCAACAAAACTACACAATCATGAGATCAGAAATCAGTTCTTTGTATTTCACTGGAAAGAGGATCAGAAGAAGCTTGAGTATTACACTAAAGAATATCAGCTTTTACCCTCTCATCAATGCATTTGAAGTGTACAAGATGGTTGATATTCCTTCTGAAGCTTCTTCAACCACAGTTTCAGCAATGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAAGATGATCCATGCTCTCCATCTCCATGGGAAAAAATTGATTGCAAAGGAAATCTTGTTACTTCATTGGATCTTTCAAACATAAATTTGAGATCAATTGGTCCTACATTTGGTGACTTGCTAGAACTTAAAACATTGGATTTGCATAACTCATCTCTTTCTGGTGAAATACAAAATTTGGGTAGCTTGCAACATCTTCAGATACTGAACTTGAGTTTCAATCAACTAACATCCTTTGGTGCAGAGCTGGATAACTTGATTAGCCTTAGAGTATTAGATTTGCAGAACAATAGTCTAAAAGGAACAGTGCCAGAAAGCTTGGGAGAGTTAGGGGATCTTCACTTATTGAATTTGGAAAATAATAGACTAGAAGGTCCACTGCCACAGACATTGAACAAGGCAACTTTAGAGCTCAGAGCATCAGGGAACTTGTGCCTAACATTTTCCACAACCACATGTGATGATGCCACATCCAACCCTACAAATGAGACACCTCAAGTTACTACAATTCCTGAAAATGAGCACAATTTGAATAAACATCATGTAGCAATCATATTAGGAGCAGTTGTTGGAGGAGTTACACTAGCCCTTCTGTTACTAACCATTTCAGTTTTCTTATATAAGACTATCAAGCAACATGAAGTAGTCTCACACACATCAAGGTCAGATATGGACATGAGAAACTGGGGTGCAGCAAGAGTGTTTTCCTACAAAGAAATTAAATTAGCTACAAGAAATTTCAAAGAAATTATCGGAAGGGGAAGTTTTGGACCTGTTTACCTTGGAAAGCTTCCAGATGGAAAATCAGTAGCTGTCAAAGTTCGCTCTGACAAATCCCAACTTGGGGCTGATTCTTTTGTTAATGAGGTTAATATTTTGTCAAGCATAAGGCATCAGAATCTTGTGTCCTTGGAAGGATTTTGCCATGAATCAAAGCATCAGATATTAGTTTATGAGTACTTGCCTGGTGGATCCCTTGTTGATCACCTCTATGGTACAAAGAGTAAAAAAACTTCTCTAAGCTGGGTTCGGCGGTTGAAAATTGCAGTTGATGCAGCAAAAGGATTGGATTATTTGCACAACGGAAGCGAACCGCGAATCATTCACCGTGACATAAAGTGCAGCAACATTCTGTTGGACATGGAGATGAATGCCAAGGTGTGTGACTTAGGCCTTTCTAAGCAAGTCATCCATGCTGAGGCAACTCATGTCACCACTCTTGTTAAAGGAACTGCTGGTTATCTTGATCCAGAGTATTATTCCACTCAACAATTGACAGAGAAAAGTGACGTATATAGCTTCGGAGTGGTTCTTTTAGAACTTATTTGTGGAAGAGAGCCATTGAGTCACTCTGGGACACCTGATTCATTCAATTTGATCTTATGGGCGAAGCCTTACTTACAAGCAGGTGCATATGAGATTGTGGATGAAGACATAAGAGGAAGCTTTGATCCTTTAAGCATGAAGAAAGCATCTTTGATTGCTGTGAGGTCAGTGGAGAGGGATGCTTCACAAAGGCCATGCATTGGAGAAGTATTGGCAGAATTGAAAGAGGCTTATACTATTCAACTCACATTCCTTGAACAATCTTGTCAAAACACCAATTGA 2751 0.3995 MELRDACACFFLFCSFWFVTFSEQDGFLSLSCGGRKSFNDSNNISWVPDTNYITTGKTTTINYTDHGSISKNVSARFFSNSRRRKCYRIPMNNATNLVLVRANFMYKNYDGLAVPPRFSVSVGTSIAATVDLSEHDPWIEEFLWTVNKDTLPFCLVSVPDGGSPVISSLEIRSLPRAAYMNAMADFPNKLLRKSYRIDCGYTGDSIRYPLDPFDRIWDSDTRFTPFHATTEFSIQLGLFNPTNNLKEQPPITVLQTGRILARKNTLTYNLPLDDDDDEFGDYYIILYFAGILPVLPSFDVLINGDVVQQNYTIMRSEISSLYFTGKRIRRSLSITLKNISFYPLINAFEVYKMVDIPSEASSTTVSAMQVIQQSTGLDLGWQDDPCSPSPWEKIDCKGNLVTSLDLSNINLRSIGPTFGDLLELKTLDLHNSSLSGEIQNLGSLQHLQILNLSFNQLTSFGAELDNLISLRVLDLQNNSLKGTVPESLGELGDLHLLNLENNRLEGPLPQTLNKATLELRASGNLCLTFSTTTCDDATSNPTNETPQVTTIPENEHNLNKHHVAIILGAVVGGVTLALLLLTISVFLYKTIKQHEVVSHTSRSDMDMRNWGAARVFSYKEIKLATRNFKEIIGRGSFGPVYLGKLPDGKSVAVKVRSDKSQLGADSFVNEVNILSSIRHQNLVSLEGFCHESKHQILVYEYLPGGSLVDHLYGTKSKKTSLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDIKCSNILLDMEMNAKVCDLGLSKQVIHAEATHVTTLVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHSGTPDSFNLILWAKPYLQAGAYEIVDEDIRGSFDPLSMKKASLIAVRSVERDASQRPCIGEVLAELKEAYTIQLTFLEQSCQNTN 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4g00010 916 ProSitePatterns Serine/Threonine protein kinases active-site signature. 748 760 IPR008271 GO:0004672|GO:0006468
Stsc4g00010 916 PANTHER OS07G0107800 PROTEIN-RELATED 463 901 - -
Stsc4g00010 916 FunFam serine/threonine-protein kinase PBS1-like 594 701 - -
Stsc4g00010 916 SUPERFAMILY L domain-like 367 524 - -
Stsc4g00010 916 ProSiteProfiles Leucine-rich repeat profile. 446 468 IPR001611 GO:0005515
Stsc4g00010 916 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 702 909 - -
Stsc4g00010 916 ProSiteProfiles Protein kinase domain profile. 626 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc4g00010 916 SUPERFAMILY Protein kinase-like (PK-like) 605 897 IPR011009 -
Stsc4g00010 916 Gene3D - 193 355 - -
Stsc4g00010 916 Gene3D Ribonuclease Inhibitor 362 536 IPR032675 -
Stsc4g00010 916 Pfam Malectin-like domain 30 353 IPR024788 -
Stsc4g00010 916 SMART LRR_typ_2 444 466 IPR003591 -
Stsc4g00010 916 SMART LRR_typ_2 467 491 IPR003591 -
Stsc4g00010 916 Gene3D Phosphorylase Kinase; domain 1 598 701 - -
Stsc4g00010 916 CDD STKc_IRAK 632 899 - -
Stsc4g00010 916 Pfam Protein tyrosine and serine/threonine kinase 628 844 IPR001245 GO:0004672|GO:0006468
Stsc4g00010 916 Gene3D Transferase(Phosphotransferase) domain 1 702 912 - -
Stsc4g00010 916 SMART serkin_6 626 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4g00010 Stsc-Chr4 54703 63567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4g00010 10 913 Receptor kinase-like Gene Family AT5G48740 61.369 0.0 1062
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Stsc4g00010 Malectin_like 3.1e-56 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4g00010 - - aprc:113850446 1380.16