Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc49g00011 ATGGAGGGTGTCACTGTGGTGAAGCCAGAGGCAGAGGAAGTTACAGGAGAAGTGCAGAAAGACCAGGAAATGGCTCTGGAGGACAGTGTTGATAGAGTTAGCAGCACTGATATGGAGGAACAACAGGTCCAGAACAACAACGTTGTTGATGATAGCAAGTCTTTGCCAGTATCTGGACTGAATGCTGTGATTTCTAGCCCAAGTCAACTTACCATCTTCTACAATGGAAGTGTCTGTGTGTATGATGGACTCCCTGCTGACAAGGTGCATGAAATAATGCTTATTGCTGCTGCTGCTGCAAAGTCAGCTGAAATGAAGAAGATTAATCCGCAATCTCCTTTTGTTTCAGCTGTTCCCACGAGGCCTTCTTCGCCTCCTGCAACCTCCAACAATGTTGCTTCGCCTCAGTCAATCTGCTTCCCTGCAGAGAAGAATTCCATCTGCAGGCTGCAAGAGTTCCCAATAGCACGTAGGCATTCGCTGCAAAGGTTTCTTGAGAAACGGCGCGACAGGCTGGGGAGCAAAGCCCCGTATCCTAACATCTCAACAACAAAAACGCCCGACAACATCGAGAACAACTTCAGTGCCGACAATTCACCGGATTTGGTTAAGCGATCAGAAGAGGAGTTGCAGCCAACTGTTGCTGCCTCTTGA 654 0.4832 MEGVTVVKPEAEEVTGEVQKDQEMALEDSVDRVSSTDMEEQQVQNNNVVDDSKSLPVSGLNAVISSPSQLTIFYNGSVCVYDGLPADKVHEIMLIAAAAAKSAEMKKINPQSPFVSAVPTRPSSPPATSNNVASPQSICFPAEKNSICRLQEFPIARRHSLQRFLEKRRDRLGSKAPYPNISTTKTPDNIENNFSADNSPDLVKRSEEELQPTVAAS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc49g00011 217 MobiDBLite consensus disorder prediction 114 133 - -
Stsc49g00011 217 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 38 187 IPR040390 -
Stsc49g00011 217 MobiDBLite consensus disorder prediction 177 200 - -
Stsc49g00011 217 ProSiteProfiles Tify domain profile. 63 98 IPR010399 -
Stsc49g00011 217 SMART tify_2 63 98 IPR010399 -
Stsc49g00011 217 Pfam tify domain 66 97 IPR010399 -
Stsc49g00011 217 MobiDBLite consensus disorder prediction 172 217 - -
Stsc49g00011 217 Pfam Jas motif 154 178 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc49g00011 Stsc-Chr49 96593 100579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc49g00011 67 186 Tify Gene Family AT5G20900 50.820 6.10e-32 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Stsc49g00011 tify 5.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc49g00011 K13464 - gmx:100306045 237.269