Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc49g00003 ATGGCTCTTGCTTCAAGAAACAAAAAAATGGCATTACTTCCTACACCTACTACTACTTCTTTCACTATCATCACATCCCTGTTACTAAGCTTTCTGGTGTTTCTTGGCGGTGTTGATGGCGGTTACTTCGTTGGATCGGAGTGTCTGAAAGTGGCTCCTTCTGAATTTGTTGGGTCAGTTAGGGATGTGCTTGATGTGTTGCAAGGGGTTATGTCCATTCTAGCTGAGTTCGACGGTGGTGATGATTTTCGTGCCTCCAATGCAGTTTCTGACTGCGTCGATTTGCTTGACTTGTCATCTGATGAACTTGACTGGTCTGTTTCCGCCACTCAGAACCCCCAAGGGAAGCATAACAGTACTGGGAACCTAAGCTCAGATTTAAGAACATGGCTAAGTGCAACAATGGCAAATCCAGAAACATGCATGGATGGATTCGAAGGCACTGATAGCGTGGTGAAGGGTCTAGTTTCCACGGGCTTATTCCAAATGATCTCACTCGTTCAGAACCTACTAACCCAAGTGAATCCCGTTCCAGATCACTCCTCCTCCTCCTCCTTTAATAATAAGTTCCCTGCATGGCTGAAACCAAGGGACAGGAAGAAGCTTCTGGAAGCAAACATGAACGGCGCGGACGCGGACGCGGTGGTGGCTGCCGATGGCACAGGGAATTACACGAACATAATGGATGCTGTGAAAGATGCTCCGGATTATAGCATGAGAAGGTATGTGATATACATAAAGAAGGGTGTTTATAATGAGAATGTTGAGATAAAGAAGAAAAAGTGGAGTCTTATGATGATTGGAGATGGAATGGACAACACCGTTGTTACCGGTAACCGCAGTTTTGTTGATGGTTGGACCACTTTCCGCTCTGCCACTTTTGCTGTGAGTGGCAGAGGATTCATAGCAAGAGACATCAGTTTCCAGAACACAGCAGGGCCTGAGAAGCACCAAGCAGTAGCGCTAAGATCCGACTCGGACCTTAGCGTCTACTACCGATGCGGTATCTTCGGTTACCAAGACAGCCTCTACGCCCATACAATGCGTCAATTTTATAGAGAATGCAAAATCGCCGGCACCGTTGACTTCATCTTCGGCGACGCGGCTGCGCTCTTCCAGAATTGCCTTATCTTGGCTAAGAAAGGCCTCCCTGATCAAAAGAACACCATCACGGCTCACGGCCGAAAAGAACCGACCGAGCCAACCGGATTCTCGATACAATTCTCCAATATAACAGCAGATTCAGACCTTGTAACTTCGATCAACACTACTCACACGTACCTTGGTAGGCCATGGAAGCCATATTCAAGGACAATTGTGATGCAATCTTTCATAAGTGATGTGCTGAGGCCGGAAGGGTGGTTAGAGTGGAGTGGGAATGTTTCTTTGGACACGCTGTATTATGCTGAGTACATGAATCATGGGCCTGGATCTGGGCTTTCAAACCGCGTGAAATGGCCCGGGTACCATGTAATGAATGATTCTAGGCAAGCTAGTAACTTCACTGTCTCACAATTTATTGAGGGGAATCTTTGGTTGCCTTCAACGGGTGTGGCTTTCACTGCTGGCTTGGGAGTTTAA 1581 0.4706 MALASRNKKMALLPTPTTTSFTIITSLLLSFLVFLGGVDGGYFVGSECLKVAPSEFVGSVRDVLDVLQGVMSILAEFDGGDDFRASNAVSDCVDLLDLSSDELDWSVSATQNPQGKHNSTGNLSSDLRTWLSATMANPETCMDGFEGTDSVVKGLVSTGLFQMISLVQNLLTQVNPVPDHSSSSSFNNKFPAWLKPRDRKKLLEANMNGADADAVVAADGTGNYTNIMDAVKDAPDYSMRRYVIYIKKGVYNENVEIKKKKWSLMMIGDGMDNTVVTGNRSFVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVYYRCGIFGYQDSLYAHTMRQFYRECKIAGTVDFIFGDAAALFQNCLILAKKGLPDQKNTITAHGRKEPTEPTGFSIQFSNITADSDLVTSINTTHTYLGRPWKPYSRTIVMQSFISDVLRPEGWLEWSGNVSLDTLYYAEYMNHGPGSGLSNRVKWPGYHVMNDSRQASNFTVSQFIEGNLWLPSTGVAFTAGLGV 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc49g00003 526 SUPERFAMILY Pectin lyase-like 210 523 IPR011050 -
Stsc49g00003 526 PANTHER PECTINESTERASE 83 514 - -
Stsc49g00003 526 SMART PMEI_2 52 173 IPR006501 GO:0004857
Stsc49g00003 526 CDD PMEI-like_4 43 178 - -
Stsc49g00003 526 Gene3D - 208 524 IPR012334 -
Stsc49g00003 526 Pfam Plant invertase/pectin methylesterase inhibitor 85 165 IPR006501 GO:0004857
Stsc49g00003 526 Pfam Pectinesterase 213 510 IPR000070 GO:0030599|GO:0042545
Stsc49g00003 526 ProSitePatterns Pectinesterase signature 1. 238 257 IPR018040 -
Stsc49g00003 526 ProSitePatterns Pectinesterase signature 2. 357 366 IPR033131 -
Stsc49g00003 526 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 172 IPR035513 -
Stsc49g00003 526 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 176 IPR035513 -
Stsc49g00003 526 FunFam Pectinesterase 207 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc49g00003 Stsc-Chr49 31504 36030 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc49g00003 21 524 Carbohydrate Esterase AT3G43270 61.240 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc49g00003 K01051 - gmx:100801813 771.926