Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc49g00002 ATGGCCAGAACCCCATTGCTCACTTCATTGTCATTTTTTTTCACTCTGTTCTTTTGCATTACCCCATTTGATGTTGTTCTTGGTTCCAAAGGATCATTAGAATGCCTTAAAGTTACTCATGCCGAATTTGCTAACTCAGTCAAAGAAGTTATTGGTGTCTTGCATAGTGTTACCTCCGCTCTCCTGCTGGAGTCTGAGTTTGTTAGAAAAGATGGCGGCTATGGCGAAGATCGTCGCCTTTCGAGCGCTGTTTCAGCGTGCCTTGAGTTGATGGAATTGTCCTCCGACGAACTCAACCGAGTTGTGTCTGTTATTGAGAATCCTAAAGGGAAGCAAAACGGCACTGGTAATTTGAGCTCTGATCTGAGGACATGGTTAAGTGCTGTACTTGCCAACACAGAAACATGCATGGAAGGATTATTACCAGAAGAAACCAGCATCATCAGTGTCAATAATAATAATAATAATAATAATAATTATAATGTAAAGAATGTAATAAGCTCTTCCATTAACAAAGTGAACACAATGGTCCACCAGCTCCTAACACAGGTCCACCCTGTTTATTCAGATAGCTACAAGAGCCAGCAACATGCTGAGTTTCCTTATTCTTGGGGTGAAAAATCAGAATCAGAGGATCTAGATGAGAGAAAAGAGTTACTAACGGTGGTGGATGCTGTGGTGGCTTTGGATGGTAGTGGGAACCACACAAGTGTGAAGGGTGCTGTGGAAAGAGCGCCTGAGTATAGCATGAAGCGTTATGTGATACATATCAAGAAGGGTGTCTACACTGAGAGAGTTGAGATCGATGGCAACAAGTGGAACATTGTCATCATTGGAGATGGAATGGATAACACTATTATCACTGGTAACTGGAGTCATAACCATAATAATGTCACCACATACTTCACTGCAACCTTTGCTGTGAAAGCGAGAGGGTTCATAGCACGTGACATTTCCTTCCACAACACAGCAGGGCCAAGAGGTGGCCAAGCAGTGGCACTAAGATCCTACTCCGACCTCTCAGTCTTCTACCGCTGCGGAATCTCCGGCTACCAAGACTCCCTCTACGCCCACGCCTCCCGCCAATTCTACCGAGAATGCATCATCTCTGGCACCGTCGACTTCATCTTCGGCCGCGCCACCGCAGTCTTCCAGAACTGCACCATACTCGCCAAGAAACCCTTACCAGAACAAACCAACACCATAACCGCTCAAGGCGCAAACGACTCCACCAAAACCTCCGGCTTCTCCTTCCAATTCTGCAACATCTCTGCATACTCTGAGCTTCTACCTTTCGTGAACTCCACAAGAACGTATCTTGGGAGACCATGGAAGAAATATTCAAGAACCGTTTTCATGCAATCTTACATGAGTGAGATGGTGTGGCCTGAAGGGTGGAAAGAGTGGAATGGGTCTTTGTATTTGGACACGCTTTATTATGGTGAGTTCTTGAATTATGGGCCTAGATCTGGGCTTTCTAAGAGAGTTAAGTGGGCCGGGTATCATGTGATGAATGGTTTTAATGAGGCTAGTAACTTCACAGTGGCCCAATTTATTCTGGGGGATCTATGGTTGCCATCAACAGGTGTGAACTTTGCATCTGGTTTTACTAAAGGAAATTTCTAA 1626 0.4483 MARTPLLTSLSFFFTLFFCITPFDVVLGSKGSLECLKVTHAEFANSVKEVIGVLHSVTSALLLESEFVRKDGGYGEDRRLSSAVSACLELMELSSDELNRVVSVIENPKGKQNGTGNLSSDLRTWLSAVLANTETCMEGLLPEETSIISVNNNNNNNNNYNVKNVISSSINKVNTMVHQLLTQVHPVYSDSYKSQQHAEFPYSWGEKSESEDLDERKELLTVVDAVVALDGSGNHTSVKGAVERAPEYSMKRYVIHIKKGVYTERVEIDGNKWNIVIIGDGMDNTIITGNWSHNHNNVTTYFTATFAVKARGFIARDISFHNTAGPRGGQAVALRSYSDLSVFYRCGISGYQDSLYAHASRQFYRECIISGTVDFIFGRATAVFQNCTILAKKPLPEQTNTITAQGANDSTKTSGFSFQFCNISAYSELLPFVNSTRTYLGRPWKKYSRTVFMQSYMSEMVWPEGWKEWNGSLYLDTLYYGEFLNYGPRSGLSKRVKWAGYHVMNGFNEASNFTVAQFILGDLWLPSTGVNFASGFTKGNF 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc49g00002 541 PANTHER PECTINESTERASE 35 526 - -
Stsc49g00002 541 ProSitePatterns Pectinesterase signature 2. 369 378 IPR033131 -
Stsc49g00002 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 185 IPR035513 -
Stsc49g00002 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 65 142 IPR035513 -
Stsc49g00002 541 Gene3D - 221 536 IPR012334 -
Stsc49g00002 541 SUPERFAMILY Pectin lyase-like 224 534 IPR011050 -
Stsc49g00002 541 Pfam Plant invertase/pectin methylesterase inhibitor 74 167 IPR006501 GO:0004857
Stsc49g00002 541 SMART PMEI_2 39 183 IPR006501 GO:0004857
Stsc49g00002 541 CDD PMEI-like_4 22 187 - -
Stsc49g00002 541 Pfam Pectinesterase 224 522 IPR000070 GO:0030599|GO:0042545
Stsc49g00002 541 FunFam Pectinesterase 220 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc49g00002 Stsc-Chr49 19933 25790 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc49g00002 33 536 Carbohydrate Esterase AT3G43270 50.485 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc49g00002 K01051 - cave:132165556 550.821