Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc499g00007 ATGGGTAGGGTAAAGCTCAAGATAAAGAGGCTGGAGAACATCAATGGGCGTCAAGCTACATATGCTAAAAGGAAGAATGGAATCATCAAAAAAGCTACAGAGTTATCTATTCTATGCGATATTGATATTATACTTCTCATGTTCTCACCAAATGGAAAACCTTCTTTGTGTAGAGGCAGGCGAAGTAGCTTTGAGGAGGTTATTGCAAAGTTTTCTCAACAAACTCCACAAGAAAGGGCAAAAAGGAAGTTGGAGAGTCTTGAAGACCTAAGTAATCAAGCTAGGCTATTACAGACTCAAATTTCAGAAACACAAAAGAGATTAAGTCAATGGAAGGAATTTGAAAAAATCAATAATGTGGAACAACTTGAACAGATGGAAAATTCGTTGAGAGATTCCATCAATCAAATTCGAAACCGTAAGGAGCATATTAAAAACCAACAGATTGTGTCACTGCAATGCAATAACCAGTTCAATGATATGCATATTCCCTTTAGAATGGGTGCTGAGCAGCATCTCCAACCTCTACCATGGATTGGTAATGGTGACAGCCCAAATCTAGTTTTACCTGATGAATCAAGCTTGCTTCTCCACAAAGATGTAGAGGGATCTGGAAGCTCATCATTTGGGAGTTATGCTAGTTACATTGGATCAAGTAGTAAAACAGATATTTCAAACTCAGGGCAAGAAAATGGTGTCCTAAGTGATTTGAGCAGCACTAATGCTCCATTGAGACTACCATTGAATAATGGACATCAGTTTCCATACATGCCATCATACAATTTCAATTTGCTGAATGATTTCAAGTTCCAAGCAGCTCCAGAGATGAACCAGCATCATCATCAGCCACAAGAAAACCATAATTTAAGTTATCATCAACATGTCAACAATGGAAGTTTTGAAGCCCCAAGGAATACTTATGACTCCAACCATCACCACCACCACCATGGTTGGGCTTCCACTTCAGGGCCTTGTGCCGTTACTATGTTTGATGAGCATTTGTATGCCCAGCAACCAAACTGA 1023 0.393 MGRVKLKIKRLENINGRQATYAKRKNGIIKKATELSILCDIDIILLMFSPNGKPSLCRGRRSSFEEVIAKFSQQTPQERAKRKLESLEDLSNQARLLQTQISETQKRLSQWKEFEKINNVEQLEQMENSLRDSINQIRNRKEHIKNQQIVSLQCNNQFNDMHIPFRMGAEQHLQPLPWIGNGDSPNLVLPDESSLLLHKDVEGSGSSSFGSYASYIGSSSKTDISNSGQENGVLSDLSSTNAPLRLPLNNGHQFPYMPSYNFNLLNDFKFQAAPEMNQHHHQPQENHNLSYHQHVNNGSFEAPRNTYDSNHHHHHHGWASTSGPCAVTMFDEHLYAQQPN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc499g00007 340 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Stsc499g00007 340 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Stsc499g00007 340 Gene3D - 15 96 IPR036879 GO:0003677|GO:0046983
Stsc499g00007 340 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc499g00007 340 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc499g00007 340 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc499g00007 340 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 274 - -
Stsc499g00007 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 54 IPR002100 GO:0003677|GO:0046983
Stsc499g00007 340 Coils Coil 77 107 - -
Stsc499g00007 340 Coils Coil 120 147 - -
Stsc499g00007 340 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc499g00007 340 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
Stsc499g00007 340 MobiDBLite consensus disorder prediction 295 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc499g00007 Stsc-Chr499 27300 30326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc499g00007 1 340 Type I MADS-box Gene Family AT2G03060 43.766 4.21e-84 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Stsc499g00007 SRF-TF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc499g00007 - - lang:109356063 436.417