Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc499g00006 ATGGCTCTCATTGGCTTTCTCTTGGTGAGTTTTCTTACTATGCTCTCTTCAGCTTATGCTAATGGTGGAGCAGCTTGGACCAATGCTCATGCTACCTTCTATGGCGGGGGTGATGCTTCAGGGACAATGGGCGGGGCTTGTGGATATGGGAACCTCTATAGCCAGGGGTACGGAACAACAACTGCTGCTTTGAGCACTGCACTCTTCAACAATGGCTTGAGCTGTGGCTCTTGTTATGAAATTAGGTGTGAGAATGACCACAAATGGTGCCTCCCTGGCTCCATTGTAGTCACTGCCACTAACTTCTGCCCTCCAAACAATGCGTTGCCAAACAATGCAGGTGGATGGTGCAATCCCCCTCTTCATCACTTTGATCTAGCTCAGCCTGTGTTCCTTCGCATTGCTCAATACAAAGCTGGAATAGTCCCTGTCGCTTACAGGAGGGTGGCATGCAGGAGTAAGGGAGGAATAAGGTTCACTATTAATGGGCATTCCTACTTCAACCTAGTACTAATTACAAACGTTGGTGGTGCTGGTGATGTTCATTCTGTGTCCATCAAGGGCTCAAAGACCGGTTGGATGGCAATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAACAACTATCTCAATGGGCAAAGCCTCTCATTCAAGGTCACTACAAGTGATGGCCGTACAGTGGTCTCTAACAATGTTGCCCCAGCTGGTTGGACCTTTGGCCAAACCTACACTGGTGCTCAATTCCACTAG 750 0.488 MALIGFLLVSFLTMLSSAYANGGAAWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTTTAALSTALFNNGLSCGSCYEIRCENDHKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVAYRRVACRSKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWMAMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWTFGQTYTGAQFH 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc499g00006 249 PANTHER EXPANSIN-A15 7 248 IPR002963 GO:0009664
Stsc499g00006 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 245 IPR007117 -
Stsc499g00006 249 SMART dpbb_1 61 146 IPR007112 -
Stsc499g00006 249 Pfam Lytic transglycolase 61 146 IPR009009 -
Stsc499g00006 249 CDD DPBB_EXPA_N 26 151 - -
Stsc499g00006 249 FunFam Expansin 156 248 - -
Stsc499g00006 249 Gene3D - 156 249 IPR036749 -
Stsc499g00006 249 FunFam Expansin 14 152 - -
Stsc499g00006 249 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 231 247 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 202 223 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Stsc499g00006 249 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Stsc499g00006 249 Gene3D - 12 152 IPR036908 -
Stsc499g00006 249 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Stsc499g00006 249 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Stsc499g00006 249 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576
Stsc499g00006 249 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Stsc499g00006 249 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Stsc499g00006 249 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Stsc499g00006 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 156 IPR007112 -
Stsc499g00006 249 SUPERFAMILY PHL pollen allergen 154 245 IPR036749 -
Stsc499g00006 249 SUPERFAMILY Barwin-like endoglucanases 11 174 IPR036908 -
Stsc499g00006 249 Pfam Expansin C-terminal domain 157 234 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc499g00006 Stsc-Chr499 24356 26013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc499g00006 1 249 Expansin Gene Family AT2G03090 78.715 1.22e-149 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc499g00006 - - gmx:100527059 469.929