Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc499g00002 ATGAATGTAGGTAAGGCAGAGTTTGGTGAGAAGGAATGGTACTTCTTTAGCCCAAGAGACAGGAAGTATCCAAATGGGGTTCGACCAAACCGTGCAACAGTTTCTGGGTATTGGAAGGCCACAGGAACAGACAAAGCTATTTACAGCAAGTGTAAGCATATTGGTGTTAAGAAGGCTTTGGTTTTCTACAAGGGAAGACCTCCAAAGGGTATCAAAACTGATTGGATCATGCATGAGTATCGTCTTCTTCAACCATCCACTAACAGGATTACTGGATCCATGAGACTGGATGATTGGGTCTTGTGTAGGATCTATAAGAAAAAGCAAGCAGCTAAAGCATTGGATCAAGGAGAGGAATACCCAGCAACAGTCCAGATTAATCTAAATGCATCAACCAACAATGATGATGATGATAAAAAGGAGTTGATGATGATGAAGAACCTTCCAAGGACTTGTTCCCTTACTTATCTTTTGGACATGAATTATTTTGGTCCAATCTCACACCTCTTATCTGATGGATCCTATAACAACTACTCATCATCAGCCTTTGAAAATTTTCAGCATAGCAACAATGTTGACAACATTGGAATAGTAGACCCCTTTGTGAAACCTCAATTGCTTGAAATGGATGATGATACATATTATGCTCGAGATTCAGGCCAGAGCCAAGTGATGAAGCAAGGGAATGATCTAACAGGATATTACTAA 708 0.4011 MNVGKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSKCKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLLQPSTNRITGSMRLDDWVLCRIYKKKQAAKALDQGEEYPATVQINLNASTNNDDDDKKELMMMKNLPRTCSLTYLLDMNYFGPISHLLSDGSYNNYSSSAFENFQHSNNVDNIGIVDPFVKPQLLEMDDDTYYARDSGQSQVMKQGNDLTGYY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc499g00002 235 ProSiteProfiles NAC domain profile. 1 107 IPR003441 GO:0003677|GO:0006355
Stsc499g00002 235 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 171 - -
Stsc499g00002 235 Pfam No apical meristem (NAM) protein 5 82 IPR003441 GO:0003677|GO:0006355
Stsc499g00002 235 Gene3D NAC domain 2 112 IPR036093 GO:0003677|GO:0006355
Stsc499g00002 235 SUPERFAMILY NAC domain 5 107 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc499g00002 Stsc-Chr499 4755 6056 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc499g00002 5 169 NAC Transcription Factor Family AT1G69490 63.584 4.98e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc499g00002 NAM 9.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc499g00002 - - ccaj:109816242 281.182