Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc499g00001 ATGGAAGCAAGTACAAGTTGTGAACTACCACCAGGGTTTAGATTTCACCCAACAGATGAGGAGCTAATTGTGTATTACCTTTGTAACCAAGCAACATCAAAGCCCTGCCCTGCTTCCATCATCCCTGAAGTGGATATTTACAAATTTGATCCATGGGAGTTGCCTGGTAAGGCAGAGTTTGGTGAGAAGGAATGGTACTTCTTTAGCCCAAGAGACAGGAAGTATCCAAATGGGGTTCGACCAAACCGTGCAACAGTTTCTGGGTATTGGAAGGCCACAGGAACAGACAAAGCTATTTACAGCAAGTGTAAGCATATTGGTGTTAAGAAGGCTTTGGTTTTCTACAAGGGAAGACCTCCAAAGGGTATCAAAACTGATTGGATCATGCATGAGTATCGTCTTCTTCAACCATCCACTAACAGGATTACTGGATCCATGAGACTGGATGATTGGGTCTTGTGTAGGATCTATAAGAAAAAGCAAGCAGCTAAAGCATTGGATCAAGGAGAGGAATACCCAGCAACAGTCCAGATTAATCTAAATGCATCAACCAACAATGATGATGATGATAAAAAGGAGTTGATGATGATGAAGAACCTTCCAAGGACTTGTTCCCTTACTTATCTTTTGGACATGAATTATTTTGGTCCAATCTCACACCTCTTATCTGATGGATCCTATAACAACTACTCATCATCAGCCTTTGAAAATTTTCAGCATAGCAACAATGTTGACAACATTGGAATAGTAGACCCCTTTGTGAAACCTCAATTGCTTGAAATGGATGATGATACATATTATGCTCGAGATTCAGGCCAGAGCCAAGTGATGAAGCAAGGGAATGATCTAACAGGATATTACTAA 864 0.4086 MEASTSCELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPGKAEFGEKEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSKCKHIGVKKALVFYKGRPPKGIKTDWIMHEYRLLQPSTNRITGSMRLDDWVLCRIYKKKQAAKALDQGEEYPATVQINLNASTNNDDDDKKELMMMKNLPRTCSLTYLLDMNYFGPISHLLSDGSYNNYSSSAFENFQHSNNVDNIGIVDPFVKPQLLEMDDDTYYARDSGQSQVMKQGNDLTGYY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc499g00001 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 219 - -
Stsc499g00001 287 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Stsc499g00001 287 ProSiteProfiles NAC domain profile. 9 159 IPR003441 GO:0003677|GO:0006355
Stsc499g00001 287 FunFam NAC transcription factor 18 163 - -
Stsc499g00001 287 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Stsc499g00001 287 SUPERFAMILY NAC domain 5 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc499g00001 Stsc-Chr499 4755 6108 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc499g00001 1 221 NAC Transcription Factor Family AT1G69490 67.249 2.12e-111 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc499g00001 NAM 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc499g00001 - - adu:107489303 378.252