Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc498g00001 ATGAGTAACAGTGACAACGTAACTTCAAACCCTATCGATGGCGAAACAAAGAAGCCCAAAGTCGTCGTCATTACGGGCCCCACCGCCTCCGGCAAGTCCAAGCTCGCCGTCGATCTCGCCTCACACTTTCCCATCGAAGTCATCAACGCCGACTCCATGCAAGTCTACCGTGGTCTCGACGTCCTCACCAACAAGCTCCCTCTCTCCCAACACAAAGGAGTGCCGCACCATCTCTTAGGTACCGTAAACCCGAACGTTGAATTTACAGCTAAAATGTTTAGGGATTCTGCTATTCCGATCATAGATGAAATACTAGCTCGCAATCACTTGCCTGTTATAGTTGGGGGCACAAATTACTATATTCAGGCTCTTGTGAGTCCGTTTCTCCTCGACGATTTTGCAGAGGATATGAACGAAGGCTGTTCTGATGATCCATCTGGTACCACATGGTCTCCTATGAGCTTCCCCGCTGATAATGACAGTTCAAGTAATTATTATGACCGGCTTAAAGAGATCGATCCAGTTGCAGCAAATAGAATCCATCCAAATAACCATAGAAAGATCAATCAATATATTAATTTGTATTCACGCACTGGTGTTGTTCCTAGCAAAGTATTCCAAGGAAAAGCAGCAGAGAAGTGGGGTCAAGTTGATAAGTTGAGATATGATTGCTGTTTTATATGTGTGGATGCATCCCTCCCTGTGCTGGACAAATATGTGGAGCAGAGGGTAGACCGCATGATGGATGCTGGATTACTCAATGAAGTCTATGATATTTACAACGTGAATGCAGATTACACTAGAGGTTTGCGGCAGGCTATTGGTGTCCGAGAATTTGAGACTCTTCTTGGAAGTTGTTTTGTTGAGGACATCTATAAAAGAGAGAAGGAACTGTCAAATGGATCCAGAATGGAAAAGGGTTTGAGATTGTTTGATGGTAATCTGATGGAGTGCTTGAAATCTTCCTCTGATACTAATACCATAAATCTTTTAGAAGAAGCAATTGAAAAAGTGAAGGTTAATACCCGGAGACTAGTTCGGCGGCAGAAGCGGATGCTCAGTAGACTGCAAACTCTATTCGGTTGGAACATACATTTCCTTGATTCCACGGAGTCAATATCAAGCAAATCAGAGGATGTATGGACTGACCAAGTGGTTGAGTCAGCTAAAAAGATAGTTAGTTCCTCCTTGTGTGAGAATGGAAGCTTGTCATCCACTTGTGGCATGTCAAATGACACCAACGCGAAAATTAATCAAAGGGACCTCTGGACTCAATACATATGCAAGGCCTGTGGAGACAGGGTCCTAAGAGGATTACATGAATGGGAGCAACACAAAAAGGGTCGTGGCCACAGGAAACGTATTTCTAGTCTCAAGAGCAAGGCACAAAGTGTTGGTACCTTGGAGAAAATGTTTGATTACTTCGAATGCAAATAG 1437 0.4377 MSNSDNVTSNPIDGETKKPKVVVITGPTASGKSKLAVDLASHFPIEVINADSMQVYRGLDVLTNKLPLSQHKGVPHHLLGTVNPNVEFTAKMFRDSAIPIIDEILARNHLPVIVGGTNYYIQALVSPFLLDDFAEDMNEGCSDDPSGTTWSPMSFPADNDSSSNYYDRLKEIDPVAANRIHPNNHRKINQYINLYSRTGVVPSKVFQGKAAEKWGQVDKLRYDCCFICVDASLPVLDKYVEQRVDRMMDAGLLNEVYDIYNVNADYTRGLRQAIGVREFETLLGSCFVEDIYKREKELSNGSRMEKGLRLFDGNLMECLKSSSDTNTINLLEEAIEKVKVNTRRLVRRQKRMLSRLQTLFGWNIHFLDSTESISSKSEDVWTDQVVESAKKIVSSSLCENGSLSSTCGMSNDTNAKINQRDLWTQYICKACGDRVLRGLHEWEQHKKGRGHRKRISSLKSKAQSVGTLEKMFDYFECK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc498g00001 478 Hamap tRNA dimethylallyltransferase [miaA]. 21 394 IPR018022 GO:0008033
Stsc498g00001 478 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 21 284 IPR018022 GO:0008033
Stsc498g00001 478 Gene3D - 156 209 - -
Stsc498g00001 478 Gene3D Classic Zinc Finger 423 465 - -
Stsc498g00001 478 Coils Coil 328 348 - -
Stsc498g00001 478 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 18 395 IPR039657 -
Stsc498g00001 478 Pfam IPP transferase 54 351 - -
Stsc498g00001 478 Gene3D - 19 422 IPR027417 -
Stsc498g00001 478 FunFam tRNA dimethylallyltransferase 421 464 - -
Stsc498g00001 478 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 263 IPR027417 -
Stsc498g00001 478 FunFam LD10347p 154 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc498g00001 Stsc-Chr498 3218 6937 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc498g00001 24 460 C2H2 Transcription Factor Family AT2G27760 57.078 7.13e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc498g00001 K00791 - gmx:100792690 718.768