Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc490g00004 ATGTCTCAAACTAACTGGGAAGCTGATAAGATGTTAGATGTGTATATCCATGATTATCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGATCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTATTCGAGTGGTGGTCAGTTTTTTGGGACATATTTATTGCGAGGACTAATGAGAAGCACTCAGAGGTTGCAGCATCTTATATTGAGACGCAACTAACTAAGGCCAGGGAGCAACAGCAGCAGCAACCACAGCAGCCACAACCACAGCCGTCGCAGCATCAACAGCAGCAGCAGCAGCAACAGCAACACATGCAGATGCAGCAACTCCTATTGCAGCGGCATGTGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAGCAACAACAGCAGCAGCAACAATCGCAACAACAGCAGCCACCACCGCCACAACAGCAGCAGCAGCAGCAGCAACCGCCACAACAGCAGCAAGGTAGGGATAGGCCTAATCTCGTAAACGGGAATACGAATGGGTTAGTTGGGAACCCCGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGTTAAAGAGAGATTCTTTGGATGAAGCAGCTATGAAGCAAAGGTTTGGTGGTGAAAACATGGGCCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCTGGGCAAGTTTTGCACGGGGCTACTGCTGCCGGGATGTCTCCGCAAGTTCAAGCTCGTAGCCAGCAATTATCAGGGCCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTCTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGATCAAATCAAGGTGGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAACCATTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTACCAGTGACGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCGAATGTTGGATCTCCGCTTCAAGGTGGTGGCCCGCCTTTTCCTCGTGGAGATACCGATATGCTAATGAAGTTGAAATTGGCTCAATTACAGCAGCAGCATCAGCAACAACCAAACAGCAATCCACAGCTGCAGCAGCAACTTCAACAGCATGCTCTCTCAAATCAACAATCTCAGAATTCAAGCCTTAACATGCATCAACAAGATAAAGTCGGGGGAGGTGGTGGCAGTGTTACTGCGGATGGTAGCATGTCGAACTCATTTAGAGGAAATGATCAGATTGGGAGAAAGAGAAAGCAACCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCAAATACAACGGGGCCATCTCCAAGTTCGGCACCCTCGACTCCCTCAACTCATACACCCGGAGATATATCTATGCCGTCTATGCCTCATAGTGGTACTTCTTCGAAGCCACTAATGATGTTCAGCACCGATGGCACCGGAACACTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGTTTCGTGGAGGACGGATCACTTGATGACAACGTTGAATCTTTTTTATCCCATGACGATACGGATCCCAGAGATGCAGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGAAAATTGCTTGCAAGTGGTGGTCACGACAAAAAGGCTGTTTTATGGCACACGGATACTCTGAAGCAGAAGGCTGTTCTTGAAGAACATTCATCTATGATCACCGATGTTCGATTCAGTCCAACCATGCCTCGTTTGGCAACATCTTCTTTTGACAAAACTGTCAGGGTTTGGGATATTGACAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCTGCATCTGTAATGTCTCTAGATTTTCATCCAAATAAAGATGATCTTATCTGTTCTTGTGATGGTGATGGCGAGATACGGTATTGGAGCATAAATAATGGAAGTTGTGCTAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGCATGCCGATATTCATTAAAGGGCCACACGAAGCTGATTCATTCTGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACTGGGAGTGAAGGGGAATGTGTGCATGATCTTAGTAGTAGTGGCAGTAAGTTTCAATCATGTGTCTTCCACCCTTCTTACCCGTCGTTGCTCGTCATTGGCTGTTACCAGACATTGGAGCTCTGGAACATGACAGAGAACAAGACAATGACTCTGACCGCTCACGAAGGTCTCATCGCCTCCCTCGCCATGTCGACTGTAAATGGTCTGGTTGCTTCCGCCAGTCACGACAAGTTCGTCAAGCTCTGGAAGTGA 2706 0.4734 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLTKAREQQQQQPQQPQPQPSQHQQQQQQQQQHMQMQQLLLQRHVQQQQQQQQQQQQQQQQQQQQQQQQQQSQQQQPPPPQQQQQQQQPPQQQQGRDRPNLVNGNTNGLVGNPGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMSPQVQARSQQLSGPTPDIKSEINPVLNPRAAGAEGSLMGIPGSNQGGNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSTSDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQLQQQHQQQPNSNPQLQQQLQQHALSNQQSQNSSLNMHQQDKVGGGGGSVTADGSMSNSFRGNDQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDISMPSMPHSGTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDTDPRDAVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPTMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKLIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSSGSKFQSCVFHPSYPSLLVIGCYQTLELWNMTENKTMTLTAHEGLIASLAMSTVNGLVASASHDKFVKLWK 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc490g00004 901 MobiDBLite consensus disorder prediction 428 553 - -
Stsc490g00004 901 CDD WD40 617 901 - -
Stsc490g00004 901 ProSitePatterns Trp-Asp (WD) repeats signature. 678 692 IPR019775 -
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 702 740 - -
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 659 694 - -
Stsc490g00004 901 FunFam Transcriptional corepressor LEUNIG 748 901 - -
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 869 901 IPR001680 GO:0005515
Stsc490g00004 901 Gene3D - 755 901 IPR015943 GO:0005515
Stsc490g00004 901 FunFam Transcriptional corepressor LEUNIG 596 747 - -
Stsc490g00004 901 Gene3D - 581 754 IPR015943 GO:0005515
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 617 658 IPR001680 GO:0005515
Stsc490g00004 901 Pfam WD domain, G-beta repeat 619 648 IPR001680 GO:0005515
Stsc490g00004 901 Pfam WD domain, G-beta repeat 780 814 IPR001680 GO:0005515
Stsc490g00004 901 Pfam WD domain, G-beta repeat 698 735 IPR001680 GO:0005515
Stsc490g00004 901 Pfam WD domain, G-beta repeat 657 691 IPR001680 GO:0005515
Stsc490g00004 901 Pfam WD domain, G-beta repeat 864 901 IPR001680 GO:0005515
Stsc490g00004 901 Pfam LisH 10 36 IPR006594 GO:0005515
Stsc490g00004 901 Coils Coil 122 157 - -
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 659 694 IPR001680 GO:0005515
Stsc490g00004 901 MobiDBLite consensus disorder prediction 150 196 - -
Stsc490g00004 901 MobiDBLite consensus disorder prediction 428 467 - -
Stsc490g00004 901 SMART Lish 8 40 IPR006594 GO:0005515
Stsc490g00004 901 MobiDBLite consensus disorder prediction 478 553 - -
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 784 824 IPR001680 GO:0005515
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats profile. 702 744 IPR001680 GO:0005515
Stsc490g00004 901 MobiDBLite consensus disorder prediction 85 117 - -
Stsc490g00004 901 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Stsc490g00004 901 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 869 901 - -
Stsc490g00004 901 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 901 - -
Stsc490g00004 901 SUPERFAMILY WD40 repeat-like 615 901 IPR036322 GO:0005515
Stsc490g00004 901 SMART WD40_4 862 901 IPR001680 GO:0005515
Stsc490g00004 901 SMART WD40_4 821 860 IPR001680 GO:0005515
Stsc490g00004 901 SMART WD40_4 610 649 IPR001680 GO:0005515
Stsc490g00004 901 SMART WD40_4 738 774 IPR001680 GO:0005515
Stsc490g00004 901 SMART WD40_4 777 815 IPR001680 GO:0005515
Stsc490g00004 901 SMART WD40_4 695 735 IPR001680 GO:0005515
Stsc490g00004 901 SMART WD40_4 652 691 IPR001680 GO:0005515
Stsc490g00004 901 MobiDBLite consensus disorder prediction 150 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc490g00004 Stsc-Chr490 21297 29180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc490g00004 696 900 Miscellaneous Gene Families AT5G08390 26.190 7.46e-14 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Stsc490g00004 WD40 0.083 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc490g00004 - - gmx:100816263 1141.33