Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc48g00021 ATGTATGGATGCAACGACATTGGTTTCGCAAACTATGGAAAAGATTGGAGACAAAAGAGAAAAATCTTTGTTCTTGAACTCTTTAGCCCTAAAATGATGCAATCGATTCGCTTGATTAGAGAAGAAGAAGTCACCAAATTGGTCAACAATTTATGTGAAGAAGCTCAAACAAATACTAGCGATTATGTGAATCTAAGTGATATGATTCTTGAGACATTAAATAGTATCATTTGTAAGTGTTCACTTGGATGTAATACACAAGATTATCGTTATGAAAGTGCAAAAGAGTTAGCAAGGAAAGTGATAATCCAACATGCAGTTGTTACTTTGGGAGATCACTTTCCTTGGTTGAGATGGGTTGATGTTCTTAGGGGCCAAATTCAAGAATTTAAGGCCACTTTTGGAGCAATGGATGCACTTCTTGATGAGGTGATTACAAAGCACAAGAAGTTGAGAAGGGAAATTATTGATGATAACCAATCAAATTATGAGAAAGACTTTGTGGATATTCTCATCCAACTCCAAGAGGATGGGTCTCATCACTATGAGCTCTCAAACGATGACATCAAAGCAATTATAGTGGACATATTTGTGGCGGGAAGTATTACAGTTTCAATGACAGTAGAATGGGCAATGGCAGAGTTATTGAGAAATCCCATCACATTGAAGAAAGCACAAGAAGAAGTTAGAGGGGTTGTGGGGCACAAACCTAAAGTTGAAGAAAGTGATATCAAGAAAATGGAGTACTTAAAGTGCGTGGTGAAAGAATCTCTGAGATTGCATGCACCAGCGCCATTTCTGGCTACTAGAATGACAGGAACTAATGATGTGAAACTCGAAGGTTTTGACATTCCGGCCAAAACCTTGGTATGCGTGAATGCATGGGCCATCCACAAAGATGGAGAATGTTGGGAAAATCCAGAAGAGTTCATTCCGGAGAGACATGAAAATAGTAAAGTTAATTACAATGGTCAAGACTCCCAATTCATAGCATTTGGTTTTGGGAGAAGAGGATGTCCTGGAATGAGTTTTGGAATTGATTCTGCTGAGTATTTGCTTGCTAACCTTCTTCATTGCTTCAATTGGAAGATCCCTCCACAAGGTATTGATATGACTGAGGCAGATGCACTCCTTTCTTCCAAAAGAGTTACACTTCATCTTAAGCCAATTCCACTTTCATTCAAATAA 1188 0.3838 MYGCNDIGFANYGKDWRQKRKIFVLELFSPKMMQSIRLIREEEVTKLVNNLCEEAQTNTSDYVNLSDMILETLNSIICKCSLGCNTQDYRYESAKELARKVIIQHAVVTLGDHFPWLRWVDVLRGQIQEFKATFGAMDALLDEVITKHKKLRREIIDDNQSNYEKDFVDILIQLQEDGSHHYELSNDDIKAIIVDIFVAGSITVSMTVEWAMAELLRNPITLKKAQEEVRGVVGHKPKVEESDIKKMEYLKCVVKESLRLHAPAPFLATRMTGTNDVKLEGFDIPAKTLVCVNAWAIHKDGECWENPEEFIPERHENSKVNYNGQDSQFIAFGFGRRGCPGMSFGIDSAEYLLANLLHCFNWKIPPQGIDMTEADALLSSKRVTLHLKPIPLSFK 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc48g00021 395 SUPERFAMILY Cytochrome P450 5 390 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 332 341 IPR017972 GO:0005506|GO:0016705
Stsc48g00021 395 Gene3D Cytochrome P450 1 395 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS E-class P450 group I signature 208 234 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS E-class P450 group I signature 251 269 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS E-class P450 group I signature 293 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS E-class P450 group I signature 329 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS E-class P450 group I signature 339 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS E-class P450 group I signature 188 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS P450 superfamily signature 199 216 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS P450 superfamily signature 330 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PRINTS P450 superfamily signature 252 263 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 PANTHER CYTOCHROME P450 71B11-RELATED 1 390 - -
Stsc48g00021 395 Pfam Cytochrome P450 7 375 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc48g00021 395 CDD CYP71-like 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc48g00021 Stsc-Chr48 129508 132085 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc48g00021 2 389 Cytochrome P450 AT3G26210 39.250 1.63e-91 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc48g00021 K20617 - gmx:100785621 469.929