Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc48g00005 ATGGTTCTTAATGTTGTTATTGGTTTCTTGGTGCTGATTAGTTGTTATGGAACCATTTATGGGACTGATACTGATATCTTCTGCTTGAAGAGTATCAAGGAATCCCTAGAAGACCCTTACAATTATTTGCAATCTTCTTGGAATTTCAATAACAAAACCGAAGGGTTTATCTGTAAATTCAATGGGGTTGACTGTTGGCACCCTGATGAGAACAGGGTCTTGAATCTCAAGCTCTCGAATATGGGGCTAAAGGGTCAGTTTCCCCGTGCCATTCGAAACTGTTCGAGTTTGACAGGCTTGGATCTTTCGGTCAACAAGCTATCCGGGTCGATTCCGGCGGATATATCCTCTCTTCTGACTTATGTGACTACTCTTGATTTGTCATCAAATGAATTCTCTGGCCCCATACCCGAAAATCTTGCAAACTGTATCTATCTTAATACCCTTAAACTTGATTCAAATAGGCTTACTGGTCAAATTCCCGGACAATTTGCCAGCCTCGGACGGCTCAAGACATTTAGTGTAGCTAACAATCTTTTGTCTGGGCCGGTTCCGAACTTTAATACTACTCAAGTGACCACCACATCATATGGAAATAATTACGGCCTATGTGGAACAGCAAGCTTGGGGCAATGTCTGGCCCCGTCTTCCAAAAGCAACACTGCGGTTATAGCCGGAGCAGCCGTTGGTGGGGTGACTCTTGCGGTGTTAGGATTGGGCATTGCAATGTTCTTCTATGTGCGCCGTTACGGTTACAGGAGGAAGAAGGAAGAGGACCCTGAAGGAAACAAATGGGCAAGAAGCATAAAGGGAGCCAAAGCAATAAAGGTTTCTTTGTTTGAGAAATCAGTTTCGAAAATGAAATTGAGTGATCTCATGAAGGCTACTAACAACTTCAGTAATACCAATATCATCGGGTCAGGACGAACGGGAACTGTTTACAAAGCTGTTCTTGAGGATGGCACATCACTTATGGTTAAGAGGTTACAGCAATCCCAGCACTCTGAGAAAGAATTTATGTCCGAGATGGCTACACTCGGCTCCGTCAAACACCGGAATCTAGTTCCTCTCTTAGGATTTTGCATGGCAAAAAGAGAGAGGCTTGTGGTGTATAAATATATGCCAAATGGAAACCTCCATGATCAGCTACATCCTGCCGAAGGTTCGAGCTCCCTTGACTGGACTCTGAGGCTCAAAATTGCAATTGGAGCTGCCAAAGGCTTTGCATGGCTTCATCATAGCTGCAATCCCCGAATCCTCCACCGGAACATAAGCTCTAAGTGCATATTGTTGGATGCAGATTTCGAGCCCAAAATCTCCGATTTCGGCCTTGCCAGACTGATGAACCCTATAGATACACATTTGAGCACTTTTGTCAATGGTGAGTTTGGAGACTTAGGCTATGTTGCTCCAGAGTACACAAGAACCTTGGTTGCTACACCAAAGGGTGATGTTTATAGCTTCGGCACCGTGCTTCTCGAGCTGGTAACCGGCGAAAGACCTACCCATGTGGCTAAAGCTCCGGAAACATTCAAAGGGAACCTTGTAGAGTGGATTATGCAGCTCTCGAGCAACGCTCAACTCCACGACGCCATCGATGAGTCACTCGCCGGAAAGGGTGTCGATAACGAGCTCTTCCAGTTTCTGAAGGTGGCTTGCAACTGTGTTTCTTTAACTGCAAAGGAGAGACCAACCATGTTTGAAGTGTATCAGTTTCTAAGAGCAATTGGGAGTAGGTACAATTTCACTACTGATGATGAGATATTGATACCTGTAGATATTGACACTGCTGATAACATGGAGGAACTTATTGTTGCTAGAGAAGCATTTGATGAATAA 1839 0.4448 MVLNVVIGFLVLISCYGTIYGTDTDIFCLKSIKESLEDPYNYLQSSWNFNNKTEGFICKFNGVDCWHPDENRVLNLKLSNMGLKGQFPRAIRNCSSLTGLDLSVNKLSGSIPADISSLLTYVTTLDLSSNEFSGPIPENLANCIYLNTLKLDSNRLTGQIPGQFASLGRLKTFSVANNLLSGPVPNFNTTQVTTTSYGNNYGLCGTASLGQCLAPSSKSNTAVIAGAAVGGVTLAVLGLGIAMFFYVRRYGYRRKKEEDPEGNKWARSIKGAKAIKVSLFEKSVSKMKLSDLMKATNNFSNTNIIGSGRTGTVYKAVLEDGTSLMVKRLQQSQHSEKEFMSEMATLGSVKHRNLVPLLGFCMAKRERLVVYKYMPNGNLHDQLHPAEGSSSLDWTLRLKIAIGAAKGFAWLHHSCNPRILHRNISSKCILLDADFEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYTRTLVATPKGDVYSFGTVLLELVTGERPTHVAKAPETFKGNLVEWIMQLSSNAQLHDAIDESLAGKGVDNELFQFLKVACNCVSLTAKERPTMFEVYQFLRAIGSRYNFTTDDEILIPVDIDTADNMEELIVAREAFDE 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc48g00005 612 CDD STKc_IRAK 305 573 - -
Stsc48g00005 612 FunFam Nuclear pore complex protein NUP107 22 186 - -
Stsc48g00005 612 Gene3D Phosphorylase Kinase; domain 1 260 373 - -
Stsc48g00005 612 SUPERFAMILY L domain-like 24 188 - -
Stsc48g00005 612 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 260 373 - -
Stsc48g00005 612 SUPERFAMILY Protein kinase-like (PK-like) 279 573 IPR011009 -
Stsc48g00005 612 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 41 187 - -
Stsc48g00005 612 ProSiteProfiles Protein kinase domain profile. 299 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc48g00005 612 Pfam Protein tyrosine and serine/threonine kinase 302 572 IPR001245 GO:0004672|GO:0006468
Stsc48g00005 612 Gene3D Ribonuclease Inhibitor 23 214 IPR032675 -
Stsc48g00005 612 Gene3D Transferase(Phosphotransferase) domain 1 374 591 - -
Stsc48g00005 612 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 374 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc48g00005 Stsc-Chr48 25738 28847 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc48g00005 10 599 Receptor kinase-like Gene Family AT3G28450 46.374 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc48g00005 PK_Tyr_Ser-Thr 1.1e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc48g00005 - - psat:127076602 947.962