Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc488g00002 ATGGAACCCAGCTATGGTGGGTTTCTCTTCTTGCTGCTGAATTCCGTCCTTTTCACGGTGGAATCGCAGTGCAGCAAGGGTTGTCCACTAGCTCTAGCTTCCTACTACATGTGGCAAGGCTCCAACTTCACCTACGTTTCACAGATCATGAAATCCAACGTGCTCACCGACCCAAACGACATAGTCGACTACAACAAAGCAACGGTTCCCAACAAAGACAGTGTCCAAGCCTTCATAAGAGTCAACGTTCCGTTCCCCTGCGACTGCATCAACGGCGAGTTTCTTGGTCACACTTTCCAGTATGACATTCAGAGCGGTGACACGTACGAGCGTGTGGCCGGGAACAATTTCGCCAACCTAACCAACGTGAATTGGCTGAGGAAGTTCAACAGTTATCCACCAAATAATATTCCTGACACTGGAACCCTAAATGTTACCGTTAATTGCTCTTGTGGGAACAGACAAGTGGCGAATTATGGTTTGTTTATCACGTATCCGCTTAGGCCTGGGGATACCTTAGGGGCTGTGGCAAAGAATCAGAGTGTTGACCCTTACTTGATTCAGAGGTACAATCCCTCTGTCAATTTCAACCAAGGGAGTGGCCTTGTTTTTATTCCAGGCAAAGATCAAAATGGTAGCTTTGAGTTTTTGCCATCCAGTTCTGGAGGTCTTGCTGGTGGGGCTATTGCCGGCATAGCTGTCGGTATAGTAGCTGGTCTTCTATTACTGGCCGTTGGTATATATTTTGGATATTTCAGGAAAAAGAAGATGCAGAGGGAGGAATTTCTCTCACAAGAGTCCAAAGCAACCTTTGGACAAGATGGTAAAGATGAAACCTCTCGTAGTGCTGTACATGAAGCTTCAGGGCCTGGTGGGCCTGCTGCCATCACGGGCATAACAGTGGACAAATCGGTGGAGTTTTCATATGAAGAATTAGCAACTGCCACGAATAACTTCAGTTTGGCTAATAAAATTGGTCAAGGTGGTTTTGGTGCGGTCTACTATGCAGAGCTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCATCAAAAGAATTTCTTGCAGAATTGAAAGTCCTGACACGTGTTCATCATCTTAACCTGGTGCGGTTGATTGGATATAGTATCGAGGGTTCGCTTTTCCTTGTGTATGAATACATTGAGAATGGAAACTTGAGCCAGCATCTCCGTGGTTCTGCAAGAGACCCGCTGCCATGGGCTACCCGTGTTCAAATTGCGTTGGATTCTGCCAGAGGTCTTGAATATATTCATGAGCATACAGTGCCTGTTGCCGATTTTGGATTGACTAAACTGACAGAAGTTGGAAGCTCATCTCTTCCTACCGGTCGTCTTGTTGGAACTTTTGGATACATGCCTCCAGAGTATGCTCAATATGGGGATGTATCACCTAAAGTAGATGTGTATGCTTTTGGAGTAGTTCTTTATGAACTTATTTCAGCTAAGGATGCTATCGTCAAGACAAGCGAATCTGTTGCCGACTCAAAGGGCCTTGTGGCTTTGTTTGAAGAAGTTCTTAGTCAGCCGGATCCTACAGAAGATCTTTGCAAACTAGTGGATCCAAGGCTTGGGGAAAACTACCCTATTGATTCCGTTCGCAAAATGGCGCAGCTAGCGAAAGCTTGTACACAGGACAATCCCCAACTGCGACCGAGTATGAGATCCATTGTCGTCGCCTTAATGACACTTTCTTCAACTACCGACGATTGGGATGTTGGCTCCTTCTATGAAAACCAAAATCTTGTGAATCTTATGTCAGGAAGATAG 1794 0.4571 MEPSYGGFLFLLLNSVLFTVESQCSKGCPLALASYYMWQGSNFTYVSQIMKSNVLTDPNDIVDYNKATVPNKDSVQAFIRVNVPFPCDCINGEFLGHTFQYDIQSGDTYERVAGNNFANLTNVNWLRKFNSYPPNNIPDTGTLNVTVNCSCGNRQVANYGLFITYPLRPGDTLGAVAKNQSVDPYLIQRYNPSVNFNQGSGLVFIPGKDQNGSFEFLPSSSGGLAGGAIAGIAVGIVAGLLLLAVGIYFGYFRKKKMQREEFLSQESKATFGQDGKDETSRSAVHEASGPGGPAAITGITVDKSVEFSYEELATATNNFSLANKIGQGGFGAVYYAELRGEKAAIKKMDMQASKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSARDPLPWATRVQIALDSARGLEYIHEHTVPVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKDAIVKTSESVADSKGLVALFEEVLSQPDPTEDLCKLVDPRLGENYPIDSVRKMAQLAKACTQDNPQLRPSMRSIVVALMTLSSTTDDWDVGSFYENQNLVNLMSGR 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc488g00002 597 ProSiteProfiles Protein kinase domain profile. 319 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc488g00002 597 FunFam PTI1-like tyrosine-protein kinase 3 433 583 - -
Stsc488g00002 597 Gene3D Phosphorylase Kinase; domain 1 304 389 - -
Stsc488g00002 597 Pfam Protein tyrosine and serine/threonine kinase 321 568 IPR001245 GO:0004672|GO:0006468
Stsc488g00002 597 Gene3D Transferase(Phosphotransferase) domain 1 390 588 - -
Stsc488g00002 597 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 583 IPR044812 GO:0019199|GO:0045087
Stsc488g00002 597 SUPERFAMILY Protein kinase-like (PK-like) 301 569 IPR011009 -
Stsc488g00002 597 MobiDBLite consensus disorder prediction 266 295 - -
Stsc488g00002 597 FunFam LysM receptor kinase 2 298 389 - -
Stsc488g00002 597 ProSitePatterns Protein kinases ATP-binding region signature. 325 347 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc488g00002 Stsc-Chr488 18868 24419 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc488g00002 11 597 Receptor kinase-like Gene Family AT3G21630 56.796 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc488g00002 Pkinase 6.8e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc488g00002 K13429 - gmx:100777781 934.865