Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc47g00027 ATGGGTATGATAGTGGAGGTTGAAACCGGAGACGAGGACGACGCCGTTTTGGTCCCGCCGCCGAATTTCTCGATGGTGGAGGACTGCATTTTCCGATCCAGCTTCCCCAGCCCTTCCAATTTTCCTTTCCTTCAAACCCTAAACCTTCGATCCGTCATATACTTGTGTCCAGAGCCCTATCCAGAAGAAAATCTGGAGTTTCTTCGATCGCAGAACATTCGGCTCTTTCAATTCGGAATTGAGGGGAAGACGGAGGTTTCTTTACCCATTCTCAGGGATTCCATCATGGAGGCTCTGAAAGTATTAATTGATGTGAGAAATCACCCAGTTTTGATCCATTGCAAAAGAGGGAAGCATAGAACAGGTTGCCTCGTCGGCTGCTTGAGAAAATTGCAGAATTGGTGCCTATCTTCTGTGTTTGAGGAGTACCAACGATTTGCGGGTGCTAAATCCAGGAACGGTGATTTAACCTTCATAGATAAGTTTGACATCATTAGCCTGCGGCAGTGCCTTTACAGTATAATCTACCAGTACCAAGGATACGGTTCGAAGAAGCGGCGATTGTTGTACAAAGATGAGAACTTGCAGAAGCCTCGACTGGCATCGTTTTAG 612 0.4657 MGMIVEVETGDEDDAVLVPPPNFSMVEDCIFRSSFPSPSNFPFLQTLNLRSVIYLCPEPYPEENLEFLRSQNIRLFQFGIEGKTEVSLPILRDSIMEALKVLIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYQRFAGAKSRNGDLTFIDKFDIISLRQCLYSIIYQYQGYGSKKRRLLYKDENLQKPRLASF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc47g00027 203 CDD PFA-DSP_Siw14 17 163 - -
Stsc47g00027 203 Gene3D Protein tyrosine phosphatase superfamily 16 166 IPR029021 -
Stsc47g00027 203 PRINTS Plant and fungal dual specificity phosphatase signature 90 104 IPR020428 GO:0016791
Stsc47g00027 203 PRINTS Plant and fungal dual specificity phosphatase signature 73 87 IPR020428 GO:0016791
Stsc47g00027 203 PRINTS Plant and fungal dual specificity phosphatase signature 54 67 IPR020428 GO:0016791
Stsc47g00027 203 PRINTS Plant and fungal dual specificity phosphatase signature 17 34 IPR020428 GO:0016791
Stsc47g00027 203 ProSitePatterns Tyrosine specific protein phosphatases active site. 112 122 IPR016130 GO:0016311|GO:0016791
Stsc47g00027 203 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 17 150 IPR029021 -
Stsc47g00027 203 FunFam probable tyrosine-protein phosphatase At1g05000 16 166 - -
Stsc47g00027 203 Pfam Tyrosine phosphatase family 17 164 IPR004861 -
Stsc47g00027 203 ProSiteProfiles Dual specificity protein phosphatase domain profile. 22 187 IPR020422 GO:0006470|GO:0008138
Stsc47g00027 203 PANTHER TYROSINE-PROTEIN PHOSPHATASE 14 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc47g00027 Stsc-Chr47 167972 170313 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc47g00027 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 68.020 2.08e-103 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc47g00027 K18045 - gmx:100785746 362.459