Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc47g00025 ATGGATTCTGATGCAAAAGATGGTGTCTTTTCGGGTTTTCCAGCAAAGAGAAGCATTGCTGAGAGGAGGGGTTTCAATTCCAATGCAGCAAGGATCAACACAGCTAGGTTCAGAATTGCAACGAGCCCTTTCCCTTCTCTGTCTCCATCTCCATCTTCTTATTCTTCTGCAGGTCGATCACCATGCATCACTATACCTCCTGGCATTAGCCCCACTGCATTGCTTGATTCTCCAATCATGCTCCCCAATTCTCAGGCTATGCCTTCTCCAACCACTGGATCATTTTATTGGATAAGTTCTCTGCCTCTTGATCAAGGGAATCTCAATGATGCTCCTGATTCTTGCCTCAAATTCAAGAACAATGCCACCCTTTCGGATCCTAATCCTTTGCCTCCTTACTCTGCCTCTCTGAATCAGGTTTCTAGTAATTGGAACTTGACAAAGGGAGGAGTTCTGCCGCGGATAGATTTTGCATTCCCGGCAGACTTTTCCAAAGGACAGATCACAAAAATCATTGAATCTCGTTCATTCAATGATGTGAAAATGGTAAACTGTTCTCTTCCTAACGTTAGTAAAGTTGAGATGATGCAAATGTCACGTTCCGATGAAGCTGGTGATGAGAGCACTCTGCCGAAAAATGTTACCCTTGGTGAGGAGGATACCGGACGCCAACCTGTTCTTGAGAAAGACCAGAAGGAGACAATGCTTGCAACCGGAGCGGTAAGGACCTCGGAGGATGGTTATAATTGGAGAAAATACGGCCAAAAACAAGTAAAAGGCAGTGAGTATCCTAGGAGTTATTATAAATGTACACAGCCTAATTGTCAGGTCAAGAAGAAGGTGGAACGATCCCATGATGGCCAAATAACCGAAATTATTTATAAGGGTACTCATAACCATGCAAAACCTCACCTTAGTCGTCGAGCATCAGGGCTTTCTGGTGATGAGATTTCAGACACGGGTGAAGCCGGTGAAAACTATGTTAAAGTTGAAGGTCCAAGTTGGGAAAATGTTCAGCCAGGATCAAAAGACATAAAGCACGGTTTGGATTGGAAGGCTGATGGTCTGGAAAGGACATCCTCAACTTCTGTTGTGACTGAACTTTCGGATCCTATATCAACTAACAAAGGCAAACCTTTGTGTGTGTTTGAAGCAGAAGACACTCCAGAGCATTCTTCCACACTTGCTAGTCATGATGGTGATGAAGATGGAACCACTCAAGCACTAGCACCGGTTGAGGATGATGCTGAAGAGGATGAATCAGATTCCAAAAGAAGGAAAAAAGAGAACTACTTGGTTGAATCAACTTTGACTTCTAGGGCTGTCCGTGAGCCAAGAGTGGTGGTCCAAATTGAGACTGAGGTTGACATACTCGATGATGGTTATCGATGGCGCAAGTATGGACAAAAAGTTGTTAAGGGAAACCCAAACCCAAGGAGCTACTATAAATGCACAACTGCCGGATGCCCCGTGAGGAAACACGTCGAAAGGGCTTCGCACAACACGAAATATGTAATCACTACATACGACGGCAAACATAATCATGAGGTTCCGACCGCCAGAAACAACAATCATATAAGCTCGAATGATGGTGGTTTACCTCCAAGTGGTCCTAATGGGCAATCAGCTCTTGCATTACCTGGAAGTGCTGTTATCCCGAAGTCTGAAAATCATCAAACTCTTACGTCTCATTTTGATCGAAAACCTGAATTTGGAAGTGACTTTCTTCGGCCTAGTTTGGTTGGAGCATTTGGCAACAATTTGAAGTTTGGCTCTTCCCCCATGTGCCAGATGAAGTATCCTTCATTGAGTAGCACCATGCCTTACAGCTCGTTTGGACTGAATACTGATCGCTGCACTGCCCCGCAAGCTGGATCCATTCCCTCGGTTTACCCCGAATTTCCAATGCCGCTTCCCTTGAATCTTCCCTCATCTGGAAACTTCCCTCTTACCGGATTAAACTTCAACTGTGCAAAGCCAATGAATCCAGTGCAGCCTTTCCTTTCAGGGCAACAAGTGAAGGATATCGATACTGGGTTCTTGAGACCTAAACAGGAGCAGAAGGATGATATAATATATGGAACATGCTTACCTCCAGTTGATCATGGAAATTCTTCAACATCAGCTCCATCATCCATTTACCAGCAAGTCATGCAAAATTTCCCTTCATAA 2172 0.4443 MDSDAKDGVFSGFPAKRSIAERRGFNSNAARINTARFRIATSPFPSLSPSPSSYSSAGRSPCITIPPGISPTALLDSPIMLPNSQAMPSPTTGSFYWISSLPLDQGNLNDAPDSCLKFKNNATLSDPNPLPPYSASLNQVSSNWNLTKGGVLPRIDFAFPADFSKGQITKIIESRSFNDVKMVNCSLPNVSKVEMMQMSRSDEAGDESTLPKNVTLGEEDTGRQPVLEKDQKETMLATGAVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGTHNHAKPHLSRRASGLSGDEISDTGEAGENYVKVEGPSWENVQPGSKDIKHGLDWKADGLERTSSTSVVTELSDPISTNKGKPLCVFEAEDTPEHSSTLASHDGDEDGTTQALAPVEDDAEEDESDSKRRKKENYLVESTLTSRAVREPRVVVQIETEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERASHNTKYVITTYDGKHNHEVPTARNNNHISSNDGGLPPSGPNGQSALALPGSAVIPKSENHQTLTSHFDRKPEFGSDFLRPSLVGAFGNNLKFGSSPMCQMKYPSLSSTMPYSSFGLNTDRCTAPQAGSIPSVYPEFPMPLPLNLPSSGNFPLTGLNFNCAKPMNPVQPFLSGQQVKDIDTGFLRPKQEQKDDIIYGTCLPPVDHGNSSTSAPSSIYQQVMQNFPS 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc47g00025 723 SUPERFAMILY WRKY DNA-binding domain 451 518 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 SUPERFAMILY WRKY DNA-binding domain 241 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 MobiDBLite consensus disorder prediction 520 536 - -
Stsc47g00025 723 MobiDBLite consensus disorder prediction 514 546 - -
Stsc47g00025 723 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 195 548 IPR044810 GO:0003700
Stsc47g00025 723 ProSiteProfiles WRKY domain profile. 453 518 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 MobiDBLite consensus disorder prediction 358 373 - -
Stsc47g00025 723 MobiDBLite consensus disorder prediction 386 428 - -
Stsc47g00025 723 FunFam WRKY transcription factor 57 444 518 - -
Stsc47g00025 723 Pfam WRKY DNA -binding domain 245 300 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 Pfam WRKY DNA -binding domain 459 516 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 FunFam WRKY transcription factor 231 304 - -
Stsc47g00025 723 Gene3D WRKY domain 445 511 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 SMART WRKY_cls 244 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 SMART WRKY_cls 458 517 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 MobiDBLite consensus disorder prediction 296 320 - -
Stsc47g00025 723 MobiDBLite consensus disorder prediction 358 377 - -
Stsc47g00025 723 Gene3D WRKY domain 231 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc47g00025 723 ProSiteProfiles WRKY domain profile. 239 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc47g00025 Stsc-Chr47 160203 163922 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc47g00025 5 521 WRKY Transcription Factor Family AT5G56270 41.744 7.94e-97 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc47g00025 WRKY 3.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc47g00025 K18835 - gmx:100800211 952.199