Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc47g00020 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCACTGGACCCTGCAGCATTCTCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACATATTGCTAAGAGCATTGAATCTTCAGACCTTAACTTCTCAAGATACGGCGACACCTTTTTTGAGGTTGTTTTCACTGGGGGTCGTACACAACCCGGAACTACCAAGCCCGATGAGGGGGAGCGCCATCCATACTCTATAATAGAGTGTGAGCCAAAGCGTGAAGTCATCCTACCATCTGTAATCTACATACAGAAGATCTTGCGGCGAAGGCCATTCCTCATTAAGAACCTCGAAAATGTTATGCGAAAGTTCCTTCAGTCCTTGGAGCTTTTCGAGGAAAATGAGAGGAAAAAGCTGGCGATCTTCACAGCACTTGCATTCTCCCAGAAGCTCTCTGGTCTTCCTCCGGAGACCGTGTTCCAACCACTTCTCAAGGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTCATAACTGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTGATTTCGATTCTGAAGCGAGGAAAAGTAGAGGATAATCTCTTGGAAATTTTCCCCCCTACAAAAAGAACCAACGAGTCTTTCTCTGAGCATTTCAGGAAGGAAGGACTGGTGGCATTGGTTGAGTACAATGAGAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCGTTGACAACTCAAATAACTGAGGAGGCTGATATATCTGAAGTAATTGAAAATGTGAAGGTGCGGGTCCGGGATGCTAAATTGCCAGACATTGAGGTTATCCGGGTCTTGTGGGATGTTTTGATGGATGCTGTCCAGTGGTCTGGGAAAAATCAGCAACAGAATGCAAATTCAGCCCTACGACAGGTAAAAACATGGGCGGAACTGTTGAACACATTCTGCACCACTGGGAAACTGGAGCTAGAACTGATGTACAAGGTACAGATGCAATGCTACGAGGACGCAAAACTGATGAAGCTGTTCCCAGAGATCATTAGATCGCTCTACGAGCAGGATGTGCTGGCTGAAGACACCATCCTTCATTGGTTCCGCAAAGGAACAAACACGAAGGGCAGGCAAACTTTTGTGAAAGCACTGGAACCCTTTGTGAATTGGCTGGAAGAGGCAGAAGAGGAGGAATAA 1236 0.4604 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFSDAVVQIYLDNAGDLEHIAKSIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLIDNSLDDLISILKRGKVEDNLLEIFPPTKRTNESFSEHFRKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEEADISEVIENVKVRVRDAKLPDIEVIRVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYEQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc47g00020 411 Coils Coil 121 141 - -
Stsc47g00020 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Stsc47g00020 411 SMART 542_3 325 410 IPR003307 GO:0005515
Stsc47g00020 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Stsc47g00020 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Stsc47g00020 411 SUPERFAMILY ARM repeat 253 408 IPR016024 -
Stsc47g00020 411 FunFam ARM repeat superfamily protein 243 411 - -
Stsc47g00020 411 Gene3D - 243 411 - -
Stsc47g00020 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 2 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc47g00020 Stsc-Chr47 125886 129767 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc47g00020 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 6.68e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc47g00020 - - gmx:100782537 778.474