Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc47g00018 ATGGCCAATTTTGTTTTACCATCATCATTGTTATTATCACTATTCCTTTTCTTGGATTATCATTGTTGGATCTTTGTTGAAGCTTCCCCTTCTGGTTCTCTTGTTACACAAGTCCCTGGTTTCAATGGCAATAATTTCCCTTCCAAGCATTACTCCGGATACATAAATATTGATGGAAATGGAGAGAGTGGGAAGAACCTGTTCTACTACTTGGTTAGTTCTGAAAGAAACCCAGTGAAGGATCCACTTGTTCTCTGGCTCAATGGTGGTCCTGGCTGCTCTAGTTTTGATGGCTTTGTTTATGAGCATGGACCGTTCAAATTTGAGGCAGGAAAATCAAAAGGGAGTCTTCCCACTTTGCATATCAATCCATACAGCTGGTCTAAGGTTTCAAACATAATATATTTGGATTCTCCAGTGGGGGTTGGACTCTCATACTCCAAGAATTCAACCAATTACGTTACTGGGGACCTACAAACCGCCTCTGATACCCATGCTTTCCTCTTAAAGTGGTTTGAGGAATTTCCAGAATTCGTAGCTAATCCATTCTATATTGCTGGTGAATCCTATGCTGGAGTTTATGTGCCTACTCTAGCTTTTGAAGTAGTTAAAGGAATCCGGAGTGGTAGAAAGCCCCTCATCAACTTTAAGGGTTATATGGTGGGAAATGGTGTCACGGATGAGATTTTTGATGGAAATGCACTCATCCCATTTGTGCATGGAATGGGCCTCATATCCGACACTATCTATGAGGAAGTACAAACTTCTTGCAAGGGAAACTTCTACAAGTATTACTCTGAGGATACTGATGATCAAGATGATAATGATAATTCATGCAGTAAGAGCTTTGAAAAAGTTGACAGGGCTATTGATGGGCTTAACGTGTATGATATATTGGAGCCATGTTACCATGAAGGAGATTCAAATTCACCATGGCTTAAGGCAGCAATTGCTAATGGAACATTACCAAATAGTTTTCAACAATTAGGGGTCAATAATAATAATAATAATAATAATAATAATAATAATAATAATGAAAGGCCTCTGAAAGTGAGAAAGAGAATGTTTGGTAGAGCTTGGCCTTTTAGGGCTCCTCTCAAACCAGGTCTTGTTCCATCATGGCCCCAATTATTGGCTCAAACCAGACATGTTGCTTGTGTTAGTGATGTAGTTGCAACTTCATGGCTAAACAACAATGCAGTAAGGAAAGCCATTCATGCTGAGGAGGAAAGTGTGACAGGGCCATGGGAATTATGCACTGGAAAGATAGAATACAATCATGATGCTGGAAGCATGATTCCTTACCACAAGAACCTAACCACCCTTGGCTATAGGGCACTTATTTTCAGTGGAGACCATGATATGTGTGTTCCATTTACTGGAAGTGAAGCATGGACTCGCTCTCTTGCATATAAAATTCTTGATGAATGGAGACCATGGAACTCTAATGGCCAAATTGCTGGTTATTTACAAGGATATGAGAACAACCTTACCTTTCTTACAGTCAAGGGAGCTGGGCACACAGTGCCAGAGTATAAACCACGTGAAGCACTTGATTTTTACTCTCGTTGGTTGGAAGGAAAACCAATATGA 1593 0.4018 MANFVLPSSLLLSLFLFLDYHCWIFVEASPSGSLVTQVPGFNGNNFPSKHYSGYINIDGNGESGKNLFYYLVSSERNPVKDPLVLWLNGGPGCSSFDGFVYEHGPFKFEAGKSKGSLPTLHINPYSWSKVSNIIYLDSPVGVGLSYSKNSTNYVTGDLQTASDTHAFLLKWFEEFPEFVANPFYIAGESYAGVYVPTLAFEVVKGIRSGRKPLINFKGYMVGNGVTDEIFDGNALIPFVHGMGLISDTIYEEVQTSCKGNFYKYYSEDTDDQDDNDNSCSKSFEKVDRAIDGLNVYDILEPCYHEGDSNSPWLKAAIANGTLPNSFQQLGVNNNNNNNNNNNNNNERPLKVRKRMFGRAWPFRAPLKPGLVPSWPQLLAQTRHVACVSDVVATSWLNNNAVRKAIHAEEESVTGPWELCTGKIEYNHDAGSMIPYHKNLTTLGYRALIFSGDHDMCVPFTGSEAWTRSLAYKILDEWRPWNSNGQIAGYLQGYENNLTFLTVKGAGHTVPEYKPREALDFYSRWLEGKPI 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc47g00018 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Stsc47g00018 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 135 IPR001563 GO:0004185|GO:0006508
Stsc47g00018 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 136 146 IPR001563 GO:0004185|GO:0006508
Stsc47g00018 530 PRINTS Carboxypeptidase C serine protease (S10) family signature 497 510 IPR001563 GO:0004185|GO:0006508
Stsc47g00018 530 FunFam Carboxypeptidase 385 529 - -
Stsc47g00018 530 FunFam Carboxypeptidase 432 527 - -
Stsc47g00018 530 ProSitePatterns Serine carboxypeptidases, histidine active site. 497 514 IPR033124 GO:0004185
Stsc47g00018 530 Gene3D - 383 530 - -
Stsc47g00018 530 FunFam Carboxypeptidase 28 329 - -
Stsc47g00018 530 ProSitePatterns Serine carboxypeptidases, serine active site. 185 192 IPR018202 GO:0004185
Stsc47g00018 530 SUPERFAMILY alpha/beta-Hydrolases 41 529 IPR029058 -
Stsc47g00018 530 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 36 514 IPR001563 GO:0004185|GO:0006508
Stsc47g00018 530 Gene3D alpha/beta hydrolase 28 354 IPR029058 -
Stsc47g00018 530 Pfam Serine carboxypeptidase 39 527 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc47g00018 Stsc-Chr47 101718 107852 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc47g00018 391 530 Calmodulin-binding Proteins AT2G22960 50.000 6.82e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc47g00018 K16296 - gmx:100790895 836.639