Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc479g00002 ATGAGTCCAAAAAAACTGAATTGCATGGTTATAGTTTTTGCCATATACTTGTTGAGTCAACATGTTCATTCTGAGCTTGAAGTTGGGTATTACAGCGATTCATGTGGCATGGCTGAGTTCATTGTAAAAGATGAAGTTAGGAAAGCTTATAATAGGGATCCTGGACTTGCTGCTGGGCTTGTTAGAATGCATTTTCATGATTGCTTCATTAGAGGATGTGATGGATCAGTGCTTCTTGATTCCACTCCCTCAAACAAAGCAGAGAAAGACTCTCCTGCGAATAATCCGAGTCTCAGAGGGTTTGATGTCATTGATAGTGCAAAGGCTAGACTTGAAGCTGAGTGCAAAGGAGTCGTTTCTTGCGCAGACATAGTAGCATTCGCAGCGAGGGATAGCATTGAGTTAGTTGGAGGAGTTGGTTATGATGTTCCAGCTGGAAGAAGAGATGGTAGAATCTCACTAATTTCGGACACAAGAACAGACTTGCCCCCTCCAACTTTTAACGTTAACCAACTCACTCAGCTCTTTGCAAAGAAGGGCTTAACAAAAGAAGAAATGGTCACCCTCTCAGGAGCACACACCATTGGACGCTCTCATTGTGTCGCTTTTAACAGCAGGCTATACAATTTCAGCACTACTTCTCTTCAGGATCCAAGTTTGGATCCCTCATATGCATTGTTCTTGAAGAGGAGATGTCCACAAGGGAATACAAACCAAAACATTGTGGTTCCAATGGACCCTTTGAGTCCTGGCGTCGCGGACGTAGGGTACTTTAATGGTATTTTGGCAAACCGAGGTCTGTTCATATCTGATCAAACTCTCTTGACTGACACAGAGACTGCTAGCCAAGTGTATCAGTATTCAAGGGATCGATACACTTGGGCAAGCAAGTTTGCAGATGCAATGGTGAAGATGGGTCAAATTGGTGTCTTAACTGGTAATGATGGAGAGATAAGAGAAAATTGCAGAGTGATCAATAGCTAA 984 0.4289 MSPKKLNCMVIVFAIYLLSQHVHSELEVGYYSDSCGMAEFIVKDEVRKAYNRDPGLAAGLVRMHFHDCFIRGCDGSVLLDSTPSNKAEKDSPANNPSLRGFDVIDSAKARLEAECKGVVSCADIVAFAARDSIELVGGVGYDVPAGRRDGRISLISDTRTDLPPPTFNVNQLTQLFAKKGLTKEEMVTLSGAHTIGRSHCVAFNSRLYNFSTTSLQDPSLDPSYALFLKRRCPQGNTNQNIVVPMDPLSPGVADVGYFNGILANRGLFISDQTLLTDTETASQVYQYSRDRYTWASKFADAMVKMGQIGVLTGNDGEIRENCRVINS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc479g00002 327 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Stsc479g00002 327 ProSiteProfiles Plant heme peroxidase family profile. 25 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601|GO:0042744
Stsc479g00002 327 PANTHER PEROXIDASE 25-RELATED 13 319 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 Pfam Peroxidase 42 290 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 Gene3D Peroxidase, domain 2 163 305 - -
Stsc479g00002 327 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 FunFam Peroxidase 163 305 - -
Stsc479g00002 327 FunFam Peroxidase 29 175 - -
Stsc479g00002 327 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601|GO:0006979|GO:0020037
Stsc479g00002 327 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Stsc479g00002 327 Gene3D - 29 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc479g00002 Stsc-Chr479 11988 13473 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc479g00002 6 327 Peroxidase AT1G05260 46.505 1.27e-98 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc479g00002 K00430 - gmx:100779031 526.168