Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc47839g00001 ATGCTGTCGAACCGTGAATCTGCACGCCGTTCAAGGATGAGGAAGCAAAAGCAGCTGGAGGACCTCACGGAAGAGGTGACGAAGCTGCAGTCGGCGAACAAGAACCTGGCGGAGGCCATAAAGGCGAAGGAGGAAGCCATGACGGAGACTGAGGCAGCCAACGGCGTCCTTAGGGCGCA 179 0.5866 MLSNRESARRSRMRKQKQLEDLTEEVTKLQSANKNLAEAIKAKEEAMTETEAANGVLRA 59
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc47839g00001 59 SMART brlzneu 1 56 IPR004827 GO:0003700|GO:0006355
Stsc47839g00001 59 PANTHER BZIP TRANSCRIPTION FACTOR 44 1 59 - -
Stsc47839g00001 59 FunFam BZIP transcription factor 1 45 - -
Stsc47839g00001 59 Pfam bZIP transcription factor 1 46 IPR004827 GO:0003700|GO:0006355
Stsc47839g00001 59 Gene3D - 1 54 - -
Stsc47839g00001 59 Coils Coil 5 53 - -
Stsc47839g00001 59 MobiDBLite consensus disorder prediction 7 24 - -
Stsc47839g00001 59 MobiDBLite consensus disorder prediction 1 25 - -
Stsc47839g00001 59 SUPERFAMILY Leucine zipper domain 1 44 IPR046347 GO:0003700|GO:0006355
Stsc47839g00001 59 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 1 41 IPR004827 GO:0003700|GO:0006355
Stsc47839g00001 59 CDD bZIP_plant_GBF1 1 46 IPR045314 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc47839g00001 Stsc-Chr47839 13 220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc47839g00001 1 59 bZIP Transcription Factor Family AT3G62420 55.932 7.82e-15 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc47839g00001 bZIP_1 2.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc47839g00001 K25786 - gmx:780550 73.9442