Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc473g00006 ATGCCAATTCTCTCATTTGTATCTCAGTGTTTCTTCTTCCCTAATAATGGTAGTGGAAGTAGACACCACACTTCACATCCAATTATTGGTTCTGAGGAGTTGGTGCCTCTGGATTTTGAGGAACCAAGCAGTGGTGATGATGAACAACCAGTGGTTCCTGTGACCTCTGATGAGTTGCCAAGTGATCAAGATCATTATGATGATCATCAAAATCAATCACTTTTGCTGGTTGATTCTGTGTGCTGCCACATGAATGAGGTGTTTGAGTATTCTGAACTTGAAGCAGCCACCAAAAATTTTGACCCTAGTAGAATACTTGGATCTGGAGGATATGGGACAGTTTATTCTGGAAAACTCAAAGATGGACGTCCTGTGGCAATAAAGTGGTTGCATAAAGACATGCAGAGGAGTTTAAGGTTGCGCGACGAGAGTTCCGAGAGCAATGACAGACTTACCAAGTTCACAAACGAATTCGCCATCTTAACTAACTTGAAGCATGAAAATCTAGTCCAGCTGTATGGCTGCACCTCTCCTCAGAGTCCTGAACTGCTTCTTGTGCAAGAGTTCATTCCCAATGGAACTGTTGCGGATCATCTTCGATCCACAGGCTCTCCTCCGTGGCCTGCGCGACTAAACATTGCCACACAGATTGCAGAAGCATTGGCTTATCTACATGCTTCTAGCATAATCCACCGGAATGTGAAAACAAGCAACATTCTGCTTGACAAAAATCTGAATGCTAAAGTTGCGNNNNNNNNNNGCGCCTTTTCCCAGAAGGCCTCACTCATGTTTCCACTGATCCTACTGGGACTCCAGGTTATATTGATCCGGAATACTATGAGCATGGACATCTTTCTGATAAGAGCGATGTGTATAGCTTCGGAGTAA 888 0.4347 MPILSFVSQCFFFPNNGSGSRHHTSHPIIGSEELVPLDFEEPSSGDDEQPVVPVTSDELPSDQDHYDDHQNQSLLLVDSVCCHMNEVFEYSELEAATKNFDPSRILGSGGYGTVYSGKLKDGRPVAIKWLHKDMQRSLRLRDESSESNDRLTKFTNEFAILTNLKHENLVQLYGCTSPQSPELLLVQEFIPNGTVADHLRSTGSPPWPARLNIATQIAEALAYLHASSIIHRNVKTSNILLDKNLNAKVAXXXXAFSQKASLMFPLILLGLQVILIRNTMSMDIFLIRAMCIASE 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc473g00006 295 ProSiteProfiles Protein kinase domain profile. 100 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00006 295 SUPERFAMILY Protein kinase-like (PK-like) 84 250 IPR011009 -
Stsc473g00006 295 Gene3D Phosphorylase Kinase; domain 1 72 189 - -
Stsc473g00006 295 MobiDBLite consensus disorder prediction 36 67 - -
Stsc473g00006 295 ProSitePatterns Protein kinases ATP-binding region signature. 106 128 IPR017441 GO:0005524
Stsc473g00006 295 Pfam Protein kinase domain 103 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00006 295 Gene3D Transferase(Phosphotransferase) domain 1 190 260 - -
Stsc473g00006 295 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 79 250 IPR044652 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc473g00006 Stsc-Chr473 19961 21822 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc473g00006 87 250 Receptor kinase-like Gene Family AT1G25390 56.805 2.26e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc473g00006 Pkinase 2.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc473g00006 - - tpra:123887372 211.46