Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc473g00005 ATGCAAGTACTTGCAGGAAAACTTAGAGATGGGTGTGAGATTGCAGTTGAAAGACTATCCAATGACAAGAGGCAAATATTTCAGCAGTTCCTCAATGAAATTCTGGTATCAAGTATCCTGCCTCACAAAAATCTTGTGACATTTTGCAGTTATGCCTTTCATCATGAGGAATTCCTGGTAGCACATGAATATCTCCCCAATGGAACTCTTGCTCATCATCTTGAATGTGAACATAATAAATGCACATTGTCTTTACTTACTCGAATGGAAATCGCCATCGATATTGCAAATGCATTGAGCTATATTCACAAGCATGGCATCATCCACCATAACATACACTCCGGCAATGTTCTGCTGGATAATAACCTTTGTGCTAAAGTTGCTGGCCTGCACTTAACAAGGAAACTTCCAGTTTCTGTCCATGCAACCACCATGGTTTCGATTTCAAGTGATTTAGCAAGAACCTGTGTTTACATTGACCCAGAGTATGTGTCTCATGGCAGAGTGAGTGCCAAGAATGATGTTTATAGCTTTGGGGTAGTTTTGTGCGATTTGATATCATCCAAGCTTGCTAAGAATTGGGAAGGTTGCGACCAAGAAAGTATTGTTGTCCTTTTGGGCAGACATATTGAAAATCAAGCTTTGAACAAGGTACTGGATCCAAGAACTGGCTTCCAATCAGACCATAAGATCATGCAGATGATGATTGAAATGGCAAATCTTGCATCTAAGTGCATGCAATTTCCACAAGAACTAAGGCCAAATATGGAACAGGTGTTAGATATCCTTAATGGAAAAAGACACGAGAGATATAAAACTATATTAGCTTTCAGAATCTTCGACTCTGCTGATCTCAGAAAAGCCACTAAGCAATTTCATCGAGATAGGATCCTTGGAGAGGGAGGGTTCGGCTGTGTCTTTTATGGAAAACTTGAAGATGGACGTGAAGTTGCAATAAAACATTTCCACAACATGAGAGAAAATTCTCTTAAGCATTTCATGAATGAAATAGAGACCTTAAGATTCTTGCACCATAAAAACCTGGTTTCACTCTATGGCCGCAGCTCTGGTGACCGTAACGAGCTCCTTCTAGTCTACGAGTATGTCCCCAATGGCACTCTCTCTAGACATCTTCATGGAGGTAAAATTGAAAAGCTACCGTGGCTTACTAGATTGAATATTGCCATAGAAGCTGCAACTGCATTGGCATATCTTCATGATTCAGGTATCATACACCGTGATGTTAAAGGAAGTAATATCCTCTTGGATGAAAAATTTTCTGTTAAAGTTGCAGATTTCGGACTCTCACGGTCCCTACCAGATTATGTTACTCATGTGTCAACAGCTCCAGCTGGGACACATGGCTATATGGACCCAGAATATATCCAAACAGGCAGGGTTTCCTTTAAAAGTGATGTGTATAGCTTCGGACTGGTCTTGTTTGAGCTCATATCATCTAGACCTGCATTTTGGAGGGAAGTCCCACGGGGTGAGACGGTCGGCCTTGCTAAGTTTGCAATCATCAAACTGTTAAGTAACAGACTGAAGGAGCTAGTGGATCCAGATATTGGATATGATTCAGATAAAAGTGTAACGGAAATGGTAACAGCAGTGGCAGAGTTGGCCTTTCAGTGCGTTCAGTGTCCTAAAGAGCTTAGACCTTCCATGAAACATGTGCTGGAGACCCTTGAGGGTATAAAGAAGGGAAGTTGGGGATTCAACCAGATAACATAG 1734 0.4123 MQVLAGKLRDGCEIAVERLSNDKRQIFQQFLNEILVSSILPHKNLVTFCSYAFHHEEFLVAHEYLPNGTLAHHLECEHNKCTLSLLTRMEIAIDIANALSYIHKHGIIHHNIHSGNVLLDNNLCAKVAGLHLTRKLPVSVHATTMVSISSDLARTCVYIDPEYVSHGRVSAKNDVYSFGVVLCDLISSKLAKNWEGCDQESIVVLLGRHIENQALNKVLDPRTGFQSDHKIMQMMIEMANLASKCMQFPQELRPNMEQVLDILNGKRHERYKTILAFRIFDSADLRKATKQFHRDRILGEGGFGCVFYGKLEDGREVAIKHFHNMRENSLKHFMNEIETLRFLHHKNLVSLYGRSSGDRNELLLVYEYVPNGTLSRHLHGGKIEKLPWLTRLNIAIEAATALAYLHDSGIIHRDVKGSNILLDEKFSVKVADFGLSRSLPDYVTHVSTAPAGTHGYMDPEYIQTGRVSFKSDVYSFGLVLFELISSRPAFWREVPRGETVGLAKFAIIKLLSNRLKELVDPDIGYDSDKSVTEMVTAVAELAFQCVQCPKELRPSMKHVLETLEGIKKGSWGFNQIT 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc473g00005 577 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 272 569 IPR044652 GO:0004672
Stsc473g00005 577 Gene3D Transferase(Phosphotransferase) domain 1 369 572 - -
Stsc473g00005 577 Gene3D Transferase(Phosphotransferase) domain 1 65 277 - -
Stsc473g00005 577 ProSiteProfiles Protein kinase domain profile. 1 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00005 577 SUPERFAMILY Protein kinase-like (PK-like) 270 567 IPR011009 -
Stsc473g00005 577 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
Stsc473g00005 577 Pfam Protein tyrosine and serine/threonine kinase 10 262 IPR001245 GO:0004672|GO:0006468
Stsc473g00005 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Stsc473g00005 577 Pfam Protein kinase domain 292 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00005 577 Gene3D Phosphorylase Kinase; domain 1 1 64 - -
Stsc473g00005 577 Gene3D Phosphorylase Kinase; domain 1 278 368 - -
Stsc473g00005 577 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Stsc473g00005 577 ProSiteProfiles Protein kinase domain profile. 292 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00005 577 SMART serkin_6 292 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00005 577 SMART serkin_6 2 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00005 577 FunFam Wall-associated receptor kinase 3 369 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc473g00005 Stsc-Chr473 16397 18813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc473g00005 279 567 Receptor kinase-like Gene Family AT1G25390 55.290 6.86e-99 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc473g00005 Pkinase 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc473g00005 - - gmx:102666805 674.085