Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc473g00004 ATGAAGATGTGCAGTGATCTCTTTCAAAGATGCTTCCCTGGAACTTCTTCTGGCACATCTCCAGATGATTCAAATCAGATAAAGTGGCCAATCTTATCCTACAAAGAACTTGCAAAAGTTACAAATAATTTTGACCAATGTAATAAGCTTGGAAAGATAGGCTTGGACAAAGTTTACCATGGCAAAACAAATGGGCGTGAGGTTGCAATTCAAAGATATTCCTACAATGAGATGCACAAATTCCAGAAGTTTCTCTATGAAGATTTGATCTCAAGTATCTTACCACATAAGAATCTTGTGTCATTTTATGGCTGTGCCTTTCATCATAAGGAGTTCCTGCTAGCACATGAATACCTCTCAAATGGCACTCTTGCTGCTCATCTTCAACACAGCAGCACACTAAATTGGCTCACTAGATTAGACATTGCAATTGACACTGCAAATGCATTGAGCTATCTTCATTACCACGGCATCGTCCATCGCAATATAAAATCCAGCAATATTCTGCTAGACAAGAACCTTGGTGCTAAACTTGGTGGCTTACATTTGTCAAGGAAACTTCCAGAAGGAGTTTCGATCGATGAAACCTATGTTACAGATGATCTAGTAGGGACATGTGGTTACATTGACCCAGAATATGTCTCAAATGGCAGGGTTGGGGCCAAAATTGATATTTACAGCTTTGGAGTGGTATTGTGTGAGCTTATATCATCCAAAGTAGCCAGGCATTGGGAAGGTTGTGACGAAGAGAGTATCACTACAATTTTAAGCAAAAAAATTGGAAGCCATGATTTGAACAAGGTGTTGGATCCAAGACTTGGCTTCCAATCAGACCATAAAATCAAGCAGATGATAACTGCTGTAGCAGAGCTTGCACTTGATTGCATGAAATCTCCACAAGAACTAAGACCAAACATGGAGCAAGTGCTAGAGATCCTCAATGGCATAAGGCAAGAGAGATATGAAACAAACTCAGTAAAAGCTTTTAAAATCTTCCACCATGCGGAACTTGAGGAAGCGACTAAAAATTTTAAGAGTTGCCTGGGAAAGGGAGGGTTTGCCACTGTATACTATGGAAAACTTAAGGATGGGCGCGAAGTTGGAGTAAAACGTTTCCACAATGAGACAGATAAGTCTATCAAGCAATTCATGAAAGAAATAGAGATCTTAAGTCTCTTGCAGCATAAAAATCTGGTGTTACTTTATGGCTGCAGCTCTCGTCACAGCAAGAACCATATTCTAGTGTATGAGTACATCTCCAATGGCACTCTCTCTAAACATCTTCATGGACCTTCCACTGAAAAGTTATCATGGCTTTCCAGATTGAACATTGCCATTGAAACTGCAACTGCATTAGTATATCTTCATGATTCAGGCATCATCCACCGCGATGTCAAAGGAAGCAACATTCTCTTGGATGAAAATTTGGCTGTTAAGGTTGCAGATTTTGGACTCTCAAGGTCACTTCCGAATTCTGATACCCATGTTTCAACCATGCCAGTGGGAACTCATGCTTACATAGATCCAGATTACTATGAATCTGGAAGAGTCAGTGATAGAAGCGATGTCTATAGCTTTGGCGTGGTCTTGTTTGAGCTCATATCATCAAAGCCACCTAGCTTGTTGAATGATGGAGAGAGTGTTACTCTAGCCAAGTTCGGAATCACTAAAATGTTAAACAAAGCATTGGAGGAGCTAGTGGATCCAATTTTCAAGTTTCGTTCAGACAAAAATTTGATGGAAATGATAGCAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCTAAAGAACTTAGACCTTCAATGAAACAGGTGCTGGAGACCCTAGAAGGAATAAAGAATGGGACATGGGGATTCAACCAAATAACAGTCTTAGTTTCAGAGAAAGTGACTCAACAAGAAATAGAAGAGCTGGTTAAAGAAAAGAATATTCAAGCTCAACCATTCATGGATGAAATTAAAGTCTTTTGA 1977 0.3986 MKMCSDLFQRCFPGTSSGTSPDDSNQIKWPILSYKELAKVTNNFDQCNKLGKIGLDKVYHGKTNGREVAIQRYSYNEMHKFQKFLYEDLISSILPHKNLVSFYGCAFHHKEFLLAHEYLSNGTLAAHLQHSSTLNWLTRLDIAIDTANALSYLHYHGIVHRNIKSSNILLDKNLGAKLGGLHLSRKLPEGVSIDETYVTDDLVGTCGYIDPEYVSNGRVGAKIDIYSFGVVLCELISSKVARHWEGCDEESITTILSKKIGSHDLNKVLDPRLGFQSDHKIKQMITAVAELALDCMKSPQELRPNMEQVLEILNGIRQERYETNSVKAFKIFHHAELEEATKNFKSCLGKGGFATVYYGKLKDGREVGVKRFHNETDKSIKQFMKEIEILSLLQHKNLVLLYGCSSRHSKNHILVYEYISNGTLSKHLHGPSTEKLSWLSRLNIAIETATALVYLHDSGIIHRDVKGSNILLDENLAVKVADFGLSRSLPNSDTHVSTMPVGTHAYIDPDYYESGRVSDRSDVYSFGVVLFELISSKPPSLLNDGESVTLAKFGITKMLNKALEELVDPIFKFRSDKNLMEMIAAVAELAFQCVQCPKELRPSMKQVLETLEGIKNGTWGFNQITVLVSEKVTQQEIEELVKEKNIQAQPFMDEIKVF 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc473g00004 658 Gene3D Transferase(Phosphotransferase) domain 1 119 327 - -
Stsc473g00004 658 Pfam Protein kinase domain 47 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00004 658 ProSiteProfiles Protein kinase domain profile. 44 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00004 658 Pfam Protein tyrosine and serine/threonine kinase 344 611 IPR001245 GO:0004672|GO:0006468
Stsc473g00004 658 FunFam Wall-associated receptor kinase 3 419 630 - -
Stsc473g00004 658 ProSiteProfiles Protein kinase domain profile. 342 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00004 658 SMART serkin_6 44 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00004 658 SMART serkin_6 342 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00004 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 327 633 IPR044652 GO:0004672
Stsc473g00004 658 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 118 326 - -
Stsc473g00004 658 Gene3D Transferase(Phosphotransferase) domain 1 419 626 - -
Stsc473g00004 658 Gene3D Phosphorylase Kinase; domain 1 19 118 - -
Stsc473g00004 658 Gene3D Phosphorylase Kinase; domain 1 328 418 - -
Stsc473g00004 658 SUPERFAMILY Protein kinase-like (PK-like) 324 616 IPR011009 -
Stsc473g00004 658 SUPERFAMILY Protein kinase-like (PK-like) 19 318 IPR011009 -
Stsc473g00004 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc473g00004 Stsc-Chr473 10812 13468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc473g00004 331 616 Receptor kinase-like Gene Family AT1G25390 54.452 1.34e-97 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc473g00004 PK_Tyr_Ser-Thr 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc473g00004 - - gmx:100801413 833.558