Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc473g00003 ATGCTAGTATTCAAATTTGTTTCCAATGGAACTCTCGCCGATCATCTTCATGGAAAACTTAAGAAACAAGGCACCTTACTACCCTGGCATACAAGATTGAACATAGCAATTGAGGCTGCAAGCGCATTGGCTTATCTTCATAATTCAGGAATTATTCACCGCGATGTAAAATCCTCCAACATTCTTTTGGATGAAGGCTTATGCGTTAAGGTGGCAGATTTTGGTCTTTCGCGCATGCTTCCTTTGGTTGTTTCAACTTCAAAAGAGGCTGCTACTTTTGCTTCTCATGCCTCAACTGCTCCACAAGGAACAAATGGATATATAGATCCTGATTATTTTCAGTTTCACAGGGTTTGTGACAAGAGTGATACTTATAGCTTTGGAGTGGTCTTGGCCGAGATTATATCGCCGTTGCCTGCGGTGGATTATACAGTAAATAGGTATGACATACCATTGCTGTCTCACCTTACCATGAACAAAATCCAAAATGAAGCATTGCATGAGTTAGTGGATCCATGCCTTGGTTTTGTAGCAGAGAATGAGATTAGAGAATCTATAAACTGCTGTGGCAGAGTTGGGATTTCAGTGCTTGCAATGTCTTAA 603 0.408 MLVFKFVSNGTLADHLHGKLKKQGTLLPWHTRLNIAIEAASALAYLHNSGIIHRDVKSSNILLDEGLCVKVADFGLSRMLPLVVSTSKEAATFASHASTAPQGTNGYIDPDYFQFHRVCDKSDTYSFGVVLAEIISPLPAVDYTVNRYDIPLLSHLTMNKIQNEALHELVDPCLGFVAENEIRESINCCGRVGISVLAMS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc473g00003 200 Gene3D Transferase(Phosphotransferase) domain 1 1 191 - -
Stsc473g00003 200 SMART serkin_6 1 186 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc473g00003 200 SUPERFAMILY Protein kinase-like (PK-like) 1 150 IPR011009 -
Stsc473g00003 200 Pfam Protein tyrosine and serine/threonine kinase 1 142 IPR001245 GO:0004672|GO:0006468
Stsc473g00003 200 ProSitePatterns Serine/Threonine protein kinases active-site signature. 51 63 IPR008271 GO:0004672|GO:0006468
Stsc473g00003 200 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 1 187 IPR044652 GO:0004672
Stsc473g00003 200 ProSiteProfiles Protein kinase domain profile. 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc473g00003 Stsc-Chr473 9936 10538 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc473g00003 1 184 Receptor kinase-like Gene Family AT1G25390 54.891 8.40e-59 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc473g00003 PK_Tyr_Ser-Thr 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc473g00003 - - ahf:112802255 340.502