Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc46g00012 ATGAAGAGAAACGGCACCAACTTTGTGCGTTTCCATTTCTACCCTTTTAAAGCTCCGAGCTTTGACCTCAACCATGCTAAATTCAGTGTCCTTGTTAATGGGGTCTCACTTTTAAGGTATTTCCAGCCAGTTAATAATAGTGTCATGGTTAAAGAGTTTATCTTGAAGATAGAATCAGAATTTCTTGAAATTTCGTTTAGGCCTGTTGCTAGTGGTGGTAGTAACTCAGGTTTTGGATTTGTGAATGGCTTAGAGGTTTTCTCTGCTCCTGAAGATTTGGTTACAGATTATGGAGCTAGGTTTGTTGGTCCTTCTGGGGTGGAAGAGTTCAAGAACCTTTCATCTCAGGTTTTAGAAACTGTTCATAGGATCAATGTTGGTGGTTTGAAAATAACACCATTCAATGATACCCTTTGGAGGACATGGATTCCTGATGAGGGTTTTCTTGTTTTCAAGGATGCAGCTAAGTCTGCATTTACCACTCACACACCGAATTACCAGAAGGGAGGGGCAACACCAGAGATTGCCCCTGATAATGTTTACATGACTGCTCAGCAGATGAATAGGGAGAACTCGAGTTTAGCTTCGAGGTTCAACATAACTTGGAATTTTTCTGTGGATACTGCTGGTGTTCCTCACCTTGTGAGGTTGCATTTCTGTGATATAGTTAGTCCTGCACTTAGTTTGCTCTACTTTGATGTGTATATCAATGGCTACACTGCAATTAAGGATCTTGATTTGTCGTCCGTTACATTCCACACGCTTGCTTCTCCATACTATGTGGATTTCATCACTGATTCGGATGATTCCGGTGTTATTCAAATAAGTGTAGGTCCTTCTGATCTTAGCAGTTCTATAAGGATGAATGCCATATTGAATGGGGCAGAGATTCTGAAGATGGTCAATGTTATTGATTCCGGTGCTGCTCATCGGAAGAAAAGATTGTGGGTGTGGATTGCTTCAGTTGCTGGAGGAATTGTTGTCTTGTGTTTAGTTGCATCTGCTTTTCTACTTGCTTTTAGATGCAGGAAGAAGAAACTGAAGCGAGGGGCCGTGGAAAGCGTTGGATGGACACCTTTAAGAATGTTTGGAGGGAGTTCCAATAGTAGAATGTCTGAACCTGGCTCTAATGGATACATTGGCTTGAAGATCCCCTTTGCAGATATACAACTTGCGACGAATGATTTCGATAGAAGTTTCGTTATAGGGTCTGGTGGGTTTGGTATGGTTTACAAAGGAGTGCTTAGAGACAATGTTAAGGTTGCTGTTAAGAGAGGCATGCCAGGGTCAAGACAGGGCCTTCCGGAATTTCATACCGAGATAACTGTTTTGTCCAAAATTCGCCATCACCACCTCGTTTCGCTGGTTGGTTTTTGCGAAGAGAATTCGGAGATGATACTTGTCTATGAGTATGTTGAGAAAGGTCCACTGAAAAGGCATTTATATGGCTCGTCCGGCTTGCCGCCTCTCTCGTGGAAGCAGCGGCTTGAGATATGCATTGGTGCTGCTAGAGGACTCCACTATCTTCACACCGGTTTCGCTCAAGGAATCATCCACCGCGACATCAAATCGACCAACATTTTGCTTGATGAAAACTATGTGGCCAAGGTTGCTGACTTTGGCCTTTCAAGATCTGGACCTTGTATCAATGAAACACATGTGAGCACTGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTTCGGGGTTGTACTATTCGAGGTTCTTTGTGCTAG 1815 0.4061 MKRNGTNFVRFHFYPFKAPSFDLNHAKFSVLVNGVSLLRYFQPVNNSVMVKEFILKIESEFLEISFRPVASGGSNSGFGFVNGLEVFSAPEDLVTDYGARFVGPSGVEEFKNLSSQVLETVHRINVGGLKITPFNDTLWRTWIPDEGFLVFKDAAKSAFTTHTPNYQKGGATPEIAPDNVYMTAQQMNRENSSLASRFNITWNFSVDTAGVPHLVRLHFCDIVSPALSLLYFDVYINGYTAIKDLDLSSVTFHTLASPYYVDFITDSDDSGVIQISVGPSDLSSSIRMNAILNGAEILKMVNVIDSGAAHRKKRLWVWIASVAGGIVVLCLVASAFLLAFRCRKKKLKRGAVESVGWTPLRMFGGSSNSRMSEPGSNGYIGLKIPFADIQLATNDFDRSFVIGSGGFGMVYKGVLRDNVKVAVKRGMPGSRQGLPEFHTEITVLSKIRHHHLVSLVGFCEENSEMILVYEYVEKGPLKRHLYGSSGLPPLSWKQRLEICIGAARGLHYLHTGFAQGIIHRDIKSTNILLDENYVAKVADFGLSRSGPCINETHVSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVRGCTIRGSLC 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc46g00012 604 FunFam receptor-like protein kinase FERONIA 363 471 - -
Stsc46g00012 604 Pfam Protein tyrosine and serine/threonine kinase 401 546 IPR001245 GO:0004672|GO:0006468
Stsc46g00012 604 Gene3D Transferase(Phosphotransferase) domain 1 472 562 - -
Stsc46g00012 604 PANTHER OS03G0124300 PROTEIN-RELATED 2 359 IPR046957 GO:0004672
Stsc46g00012 604 ProSitePatterns Protein kinases ATP-binding region signature. 402 424 IPR017441 GO:0005524
Stsc46g00012 604 ProSiteProfiles Protein kinase domain profile. 396 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc46g00012 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 517 529 IPR008271 GO:0004672|GO:0006468
Stsc46g00012 604 Gene3D Phosphorylase Kinase; domain 1 366 471 - -
Stsc46g00012 604 SUPERFAMILY Protein kinase-like (PK-like) 373 553 IPR011009 -
Stsc46g00012 604 Pfam Malectin-like domain 6 299 IPR024788 -
Stsc46g00012 604 Gene3D - 117 302 - -
Stsc46g00012 604 Gene3D - 1 90 - -
Stsc46g00012 604 FunFam Receptor-like protein kinase FERONIA 117 302 - -
Stsc46g00012 604 SMART serkin_6 396 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc46g00012 Stsc-Chr46 129332 131942 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc46g00012 5 557 Receptor kinase-like Gene Family AT3G46290 46.655 4.47e-154 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Stsc46g00012 Malectin_like 4.4e-24 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc46g00012 - - gmx:100801169 894.034