Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc469g00003 ATGGATCTAACGAACCGCTTCTTGCTACTGTTCTTGATGAGCTTCTTGGTTTGTGGTTCTTCGCAGGTTGAAGACGACGTGAAGTGCCTCAAAGGCTTCAAGGACTCTCTCAGTGACCCTCAACAGAGACTCGCCAAGTGGAATTTCGGAAACACTACTTCTGGTTTCGTCTGCAACTTCGATGGTGTCTCATGCTGGAACCCGCAGGAGAATCGTGTTATTGGTCTTGAACTCACTGGAATGAATCTCTCTGGTAAGATTCCAGAGTCAATCAAGTACTGCGGCAAGAGTCTTCAGAAGCTAGTTCTTGGATCCAACTCCCTCTCGGGTTCGATTCCTTCTAAGATCTGTGAGTGGTTGCCGTATTTGGTCACACTTGACCTTTCCGGCAACGATCTTTCTGGAACTATACCGGCTTCGTTAGAGAATTGTTCTTACCTGAACGAGTTGGAGCTCTTTGATAACAATCTTTCCGGTCAAATTCCCGGTGAAATCGGGAGCTTGGTGAGGTTGAATAAGTTTTCTGTAGCTAACAATGATCTCACCGGCGCGATCCCCAGCTCGCTTTCGCACTTCGGGAAGGAAGCTTTTGATGGGAACAGCGGTCTGTGTTCCAAATGTGGTGGATTGAGTAAGAAGAATCTTGCGATTATTATCGCTGCCGGAGTGTTTGGTGCTGCGGTGTCATTGTTGTTGGCTTTTGGGTTGTGGTGGTGGTACCATTTGGGATCAAGTAGGGATAAGAGAGGGTATGGAGTTGGAAGCACTAGCGATGGTGGTGGTGGTGATAATTGGGCTTTCAGTTTGAGGGGTCACAAGCTTGTTCAGGTTACTCTGTTTCAGAAGCCACTTGTGAAGGTTAAGTTAGGGGACTTGATGGCTGCAACTAATAATTTTAGTGCTGAGAATGTTCTTATGGCGACGAGGACAGGGACTACTTATAAAGCTGATCTTCGCGATGGCTCCTCGCTCGCGGTGAAGCGGCTTAGTAAGTGTAAGATTGGGGAGAAGCAGTTTAGGATGGAGATGAACAGGTTAGGCCAGGTTAGGCACCCGAATTTGGCTCCCCTGTTGGGTTTCTGTGTGGTGGAAGATGAGAAGCTTTTGGTTTATAAGCACATGTCAAATGGGACTCTCTATAACTTGTTGCATAAGAATGGTGGTGGTGTGTTGGATTGGGAGATGAGGTTCAGGATTGGATTGGGCGCGGCGAGGGGCCTCGCGTGGCTGCACCATGGATGTCATCCTCCAATTATACAGCAGAACATCTGCTCCAATGTGATTCTTGTTGATGAAGATTTCGATGCACGGATAATGGACTTTGGCCTTGCCAGGCTGTTGACATCTGATACGAATGGGAGCAGTTTTGTTAATGGGGATTTGGGGGAACTCGGCTATGTTGCGCCAGAGTATCCGAGTACAATGGTTGCTTCTTTGAAAGGGGATGTATATGGTTTTGGAATTGTGCTTCTGGAGTTGGTTACCAGTCGAAAACCTCTCGATGTCAACAATGGAGAGGAAGAATTTAAGGGTAGTTTGGTGGATTGGGTGAATAAGCTTTCAAGTTCTGGTAGAGCAAAGGATTGCATTGATAAAGCTATATTTGGAAGGGGACATGACGAGGAGATACTCAAGTTCATGAAAATTGCATCTAATTGTGTGGTTTCTCACCCTAAGGAGAGGGTGTCTATGTTCCAGGTTTATAACTCCTTGAAGAGTATGGCAAAAGATCACAGTTTCTCAGAATATGATGATGAATTTCCACTGATCTTTGGTAAACCTGGAAATGATGAGGCTTAG 1800 0.4617 MDLTNRFLLLFLMSFLVCGSSQVEDDVKCLKGFKDSLSDPQQRLAKWNFGNTTSGFVCNFDGVSCWNPQENRVIGLELTGMNLSGKIPESIKYCGKSLQKLVLGSNSLSGSIPSKICEWLPYLVTLDLSGNDLSGTIPASLENCSYLNELELFDNNLSGQIPGEIGSLVRLNKFSVANNDLTGAIPSSLSHFGKEAFDGNSGLCSKCGGLSKKNLAIIIAAGVFGAAVSLLLAFGLWWWYHLGSSRDKRGYGVGSTSDGGGGDNWAFSLRGHKLVQVTLFQKPLVKVKLGDLMAATNNFSAENVLMATRTGTTYKADLRDGSSLAVKRLSKCKIGEKQFRMEMNRLGQVRHPNLAPLLGFCVVEDEKLLVYKHMSNGTLYNLLHKNGGGVLDWEMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEDFDARIMDFGLARLLTSDTNGSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGIVLLELVTSRKPLDVNNGEEEFKGSLVDWVNKLSSSGRAKDCIDKAIFGRGHDEEILKFMKIASNCVVSHPKERVSMFQVYNSLKSMAKDHSFSEYDDEFPLIFGKPGNDEA 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc469g00003 599 Gene3D Transferase(Phosphotransferase) domain 1 374 590 - -
Stsc469g00003 599 SUPERFAMILY L domain-like 22 195 - -
Stsc469g00003 599 Pfam Protein tyrosine and serine/threonine kinase 312 513 IPR001245 GO:0004672|GO:0006468
Stsc469g00003 599 FunFam Leucine-rich repeat receptor-like protein kinase 23 187 - -
Stsc469g00003 599 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 76 573 - -
Stsc469g00003 599 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 260 373 - -
Stsc469g00003 599 Pfam Leucine Rich Repeat 123 144 IPR001611 GO:0005515
Stsc469g00003 599 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 374 593 - -
Stsc469g00003 599 Gene3D Ribonuclease Inhibitor 23 209 IPR032675 -
Stsc469g00003 599 SUPERFAMILY Protein kinase-like (PK-like) 277 571 IPR011009 -
Stsc469g00003 599 Gene3D Phosphorylase Kinase; domain 1 261 373 - -
Stsc469g00003 599 Pfam Leucine rich repeat N-terminal domain 24 66 IPR013210 -
Stsc469g00003 599 ProSiteProfiles Protein kinase domain profile. 299 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc469g00003 Stsc-Chr469 17339 19138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc469g00003 9 599 Receptor kinase-like Gene Family AT3G28450 64.013 0.0 746
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Stsc469g00003 PK_Tyr_Ser-Thr 3.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc469g00003 - - gmx:100810378 892.878