Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc469g00001 ATGAGTTGCTTTCTGTACTTCAAAGACAAGTCTAGGAAGTGGAAGCGTAGATCAGCACCTGAACTGAAAGAACAAGAGAAAACCAAGTTCACAGATGTTGAAAGAGTCACAAAGTCTTCAGGATCTTCGTCCTCACCTCGTGGTATACCGGAATTGTATGAGGAGAAAGCTCACAATTTGAGGATATTCTCCTACAACGAGCTCCGGCTCGCGACCAATGATTTCAGTAGAGTATTTAAGATAGGAGAAGGTGGATTTGGGAGTGTATATAAAGGTTCAATTAAGCCTCTCACTGCAAATGGTGATCCTATTTCAGTTGCCATCAAAAGGCTTAACCAGAATGGCTTACAGGGCCATAAACAATGGTTAGCTGAAGTTCAGTTTCTTGGCGTCGTGGAGCACGAAAATCTTGTCAAACTAATAGGCTACTGTTCTGTGGATGGAGAAAGAGGAATCCAAAGACTGCTAGTGTACGAATATATGTCGAATAAGAGCTTAGAATCTCATCTTTTCAATAAAGCCTATGATCCTCTTCCTTGGAAAACAAGACTTGACATAGCACTTGGAGCAGCTCAAGGGTTAGCATATCTGCATGAAGAATCAGAAGTTCAGGTGATATATCGGGATTTTAAATGCTCGAATATACTACTGGATGAAAATTTTAGGCCAAAACTTTCAGATTTTGGACTTGCAAGGGAGGGACCCGAAGCTGGACACACTCATGTTTCAACTGCTGTGATGGGAACAAATGGCTATGCTGCTCCAGATTACATTGAAACAGGTCATCTCACTACCAAGAGCGACGTGTGGAGTTTCGGCGTGGTGCTTTATGAGATGCTTACAGGAAGACGTTCATTGGAGAGAAACCGACCCAAAAACGAGCAGAGACTTTTGGAATGGGTGAAGCAATATCCTGCTGAGACCAAAAAGTTTGTCCTAATAATGGATGCAATACTTGAGGGCCAGTATTCGATTACCGGAGCGCGAAAACTTGCAAAGCTTGCTGATCATTGCCTTAGTAGGAGTGCAAAAGATCGGCCTTCCATGAGTCAAGTGGTAGGTTTACTGAAGCAGATAATCCAAACTTGTGATGGTGAAAAATCTGCAGAGGAGAACAATGGCATATCAGAAGATGATCCAACTGAGTCTGAAGAAAACTCGACTCAATCGGCTCCTTCAGAGTTATGGAGAAAGAGGATGGATCATCTTGCAAAACTTGGTGAGCATGTGGAGAGTGCTAGTAGAAGAAGATTTATGATCCTACAGAGAGGAAAAGTTCCTTAA 1284 0.4252 MSCFLYFKDKSRKWKRRSAPELKEQEKTKFTDVERVTKSSGSSSSPRGIPELYEEKAHNLRIFSYNELRLATNDFSRVFKIGEGGFGSVYKGSIKPLTANGDPISVAIKRLNQNGLQGHKQWLAEVQFLGVVEHENLVKLIGYCSVDGERGIQRLLVYEYMSNKSLESHLFNKAYDPLPWKTRLDIALGAAQGLAYLHEESEVQVIYRDFKCSNILLDENFRPKLSDFGLAREGPEAGHTHVSTAVMGTNGYAAPDYIETGHLTTKSDVWSFGVVLYEMLTGRRSLERNRPKNEQRLLEWVKQYPAETKKFVLIMDAILEGQYSITGARKLAKLADHCLSRSAKDRPSMSQVVGLLKQIIQTCDGEKSAEENNGISEDDPTESEENSTQSAPSELWRKRMDHLAKLGEHVESASRRRFMILQRGKVP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc469g00001 427 SUPERFAMILY Protein kinase-like (PK-like) 57 356 IPR011009 -
Stsc469g00001 427 PANTHER OS01G0588500 PROTEIN-RELATED 34 359 - -
Stsc469g00001 427 MobiDBLite consensus disorder prediction 364 397 - -
Stsc469g00001 427 MobiDBLite consensus disorder prediction 17 34 - -
Stsc469g00001 427 Pfam Protein tyrosine and serine/threonine kinase 80 354 IPR001245 GO:0004672|GO:0006468
Stsc469g00001 427 Gene3D Transferase(Phosphotransferase) domain 1 161 383 - -
Stsc469g00001 427 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Stsc469g00001 427 MobiDBLite consensus disorder prediction 17 50 - -
Stsc469g00001 427 CDD STKc_IRAK 81 359 - -
Stsc469g00001 427 Gene3D Phosphorylase Kinase; domain 1 49 160 - -
Stsc469g00001 427 ProSitePatterns Protein kinases ATP-binding region signature. 81 109 IPR017441 GO:0005524
Stsc469g00001 427 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc469g00001 427 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc469g00001 Stsc-Chr469 3907 8843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc469g00001 1 399 Glycoside Hydrolase AT3G07070 41.990 2.18e-95 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Stsc469g00001 PK_Tyr_Ser-Thr 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc469g00001 - - gmx:100784625 648.277