Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc466g00006 ATGGAACTAACAAATGGATTCAAAGGGGTGAATAATGTGAATTCACATATGCAGGACTTTTTTATGCCTTTCACTACTAGTCACAGCTTCTTGAGTTCTCCAGAACCTGAATTTTCAGGCCTTGTTCATTATGATAGTCACAGTAATCTTCCATCTTCACTTACCATATCTTCTTCAGAAGATAATGAAATCCAACGAGGTGAAAAGCGGAAAGCGGTGAATACGCCGGACACCATGTCAGCAAACTCAACTCCTGCAGTATCTGAGAGTGGCAGCAATACAAAAAATAATCATGGAAGAGGCAAGAGAGGAAAAAAGAATGAAACAGAAGATAAGAAATCAAAGGAAGTAGTTCATGTTAGAGCTAGAAGAGGCCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGGAGAGGGAAAATCAATGAGAAACTCAAATGCTTACAGAACATTGTCCCAGGATGTTATAAGACTATGGGAATGGCAATAATGTTGGAAGAGATCATAAACTATGTTCAGTCCTTGCAGCATCAGGTGGAGTTCCTCTCTATGAAGCTAACTGCAGCAAGTGCTTTTTATGACTTCAACTCAGAGACAGATGATTTAGAAACATTGCAGGTGCATGCATGCCCATGA 639 0.3991 MELTNGFKGVNNVNSHMQDFFMPFTTSHSFLSSPEPEFSGLVHYDSHSNLPSSLTISSSEDNEIQRGEKRKAVNTPDTMSANSTPAVSESGSNTKNNHGRGKRGKKNETEDKKSKEVVHVRARRGQATDSHSLAERVRRGKINEKLKCLQNIVPGCYKTMGMAIMLEEIINYVQSLQHQVEFLSMKLTAASAFYDFNSETDDLETLQVHACP 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc466g00006 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 194 IPR036638 GO:0046983
Stsc466g00006 212 SMART finulus 132 182 IPR011598 GO:0046983
Stsc466g00006 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 176 IPR011598 GO:0046983
Stsc466g00006 212 CDD bHLH_AtBPE_like 116 201 - -
Stsc466g00006 212 MobiDBLite consensus disorder prediction 103 132 - -
Stsc466g00006 212 FunFam transcription factor BEE 3-like 123 194 - -
Stsc466g00006 212 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 51 199 IPR024097 GO:0006355
Stsc466g00006 212 Pfam Helix-loop-helix DNA-binding domain 130 177 IPR011598 GO:0046983
Stsc466g00006 212 Gene3D - 126 188 IPR036638 GO:0046983
Stsc466g00006 212 MobiDBLite consensus disorder prediction 51 132 - -
Stsc466g00006 212 MobiDBLite consensus disorder prediction 75 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc466g00006 Stsc-Chr466 37220 38217 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc466g00006 26 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.804 3.38e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc466g00006 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc466g00006 - - gmx:100806942 258.455