Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc465g00002 ATGGGGGAAGGAGAAGGAGGTGATTGCCCTTCGAGGAATGTGTCATCAGATGCACCTGCGGTGCCGGTGCCGCCGTCGGATATTCCCGCCAAGAAGCTTGCCAGGCAGCTGGATTTCACCGGCTTAGCCGGTATGCCGGGTGGCGCGCCATTCCCAGAACACTCGCAGCAACAGCAACAACAGCTTCAGCCGCAAGTGGTGGCACAGTCACATTCAGAGTCGCAGTCACGGTCACATCCTCAGCCACTGTCGCAACCGATGGTTTTGATGCCGATGCCGCATCCGACGCAGGCTCCGCACCTTTCAACGAGGGTTGGTAAATCAGAATCTCCAAAACCAAGATCAAGGACCAATTTTGAAACAAAAGAAGCTACTCCAAAGAAACAAAAGCAATGCAATTGTAAACACTCGAAGTGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATACTGTGATGGTTGCAACTGTGTAAATTGTTACAACAATGTTGATAATGAAGCAGCTAGACGAGAAGCTGTTGGAGCTACCTTAGAACGCAATCCAAATGCATTTAGGCCAAAAATTGCAAGCAGCCCTCATGGACCACATGACAACAGGGAGGATGCTGGCGAAGTTGTTATATTGGGAAAGCACAATAAGGGATGTCATTGTAAAAAGTCTGGCTGCCTCAAGAAGTATTGCGAGTGTTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAGAATTTTGAGGGAAGCGAAGAGAGACAAGCATTGTTCCATGGAGATCAAAATACCAACATGACATATATTCAGCAAGCAGCAAATGCTGCGATAACTGGTGCTGTCGGTTCCTCTGGCTTTTCATCACCACCATTATTATCAAAGAAAAGAAAAGGTCAGGATCACTCTTTTGTGCCCACGGTCAAGGATACTTCTATTGGGAAGCTAGGAAAACAGGCAAACCATGTCAAAGGTCCAGCACCCTCTCCTTCCTTTTCTTCTGCCCCTAGTGCTCATGTTGGAACTGCAACATTAGGTCCTTCAAAAGTTATATACAGGTCTGTATTGGCAGACATACTACAACCAGAGCACCTAAAGGAGCTTTGCTCAGTTCTAGTGCTACTATCTGGACAAGCTGCAAAGACAGTAACAGACCAGAAAAATATATTGCGCAAACATATAGATGATCAGACAGAACCTTCCCTTGCTTCTTCAACTCAAGAACAGTTACCAAGCCAAAAGGGAGCTGATGTCGAGAAAGCTATGTCTGATGATGGTTCAAGTGAGAACCGAATAGATAAGGTCAGCTCGGATAATTCTAGTTCAGATGGTGTTGGTGTCCTCAAAGGGAGGCCAATGTCTCCTGGAACTTTAGCATTAATGTGCGATGAACATGATACAATGTTCATGACTGCTGCCTCTCCTAGTGAGCCAATTGCTCACACTTGTAACAAATCTTCTCAATTGGCCTGTGGACAAAAAATGACTGAGGTATATGCAGAGCAAGAAAGGATCGTTTTGACAAAGTTCAGAGATTTTCTTAATAGAGTTATCACTATGGGAGAAATAAACGAAACAAAATATTCTTCATTAGCCAGAAGTGAATTGGAGAGTGATAGGGACCCAATCGTCAATGGCACTGAAAATGCTGCAACTGAGACAGCAGATCAAGCAGCCACAAAAAATGGTGTTATCAAAGCTGTTGTTCATCCTCTGGCAACAAGTAGGAGTTTGACTGATTCAATATCTTTGATCCATAGTAATCTTGTTCCTGAAAATGGTGAAAAAGAGGTATGA 1800 0.4411 MGEGEGGDCPSRNVSSDAPAVPVPPSDIPAKKLARQLDFTGLAGMPGGAPFPEHSQQQQQQLQPQVVAQSHSESQSRSHPQPLSQPMVLMPMPHPTQAPHLSTRVGKSESPKPRSRTNFETKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVDNEAARREAVGATLERNPNAFRPKIASSPHGPHDNREDAGEVVILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNTNMTYIQQAANAAITGAVGSSGFSSPPLLSKKRKGQDHSFVPTVKDTSIGKLGKQANHVKGPAPSPSFSSAPSAHVGTATLGPSKVIYRSVLADILQPEHLKELCSVLVLLSGQAAKTVTDQKNILRKHIDDQTEPSLASSTQEQLPSQKGADVEKAMSDDGSSENRIDKVSSDNSSSDGVGVLKGRPMSPGTLALMCDEHDTMFMTAASPSEPIAHTCNKSSQLACGQKMTEVYAEQERIVLTKFRDFLNRVITMGEINETKYSSLARSELESDRDPIVNGTENAATETADQAATKNGVIKAVVHPLATSRSLTDSISLIHSNLVPENGEKEV 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc465g00002 599 MobiDBLite consensus disorder prediction 395 453 - -
Stsc465g00002 599 ProSiteProfiles CRC domain profile. 128 252 IPR005172 -
Stsc465g00002 599 MobiDBLite consensus disorder prediction 419 433 - -
Stsc465g00002 599 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 129 164 IPR005172 -
Stsc465g00002 599 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 215 249 IPR005172 -
Stsc465g00002 599 MobiDBLite consensus disorder prediction 319 340 - -
Stsc465g00002 599 MobiDBLite consensus disorder prediction 1 125 - -
Stsc465g00002 599 MobiDBLite consensus disorder prediction 52 83 - -
Stsc465g00002 599 MobiDBLite consensus disorder prediction 107 125 - -
Stsc465g00002 599 PANTHER TESMIN/TSO1-RELATED 52 524 IPR028307 -
Stsc465g00002 599 MobiDBLite consensus disorder prediction 400 414 - -
Stsc465g00002 599 SMART CXC_2 127 167 IPR033467 -
Stsc465g00002 599 SMART CXC_2 212 253 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc465g00002 Stsc-Chr465 15032 19065 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc465g00002 1 547 CPP Transcription Factor Family AT4G29000 53.082 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Stsc465g00002 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc465g00002 - - gmx:100777698 767.303