Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc457g00001 ATGGGGTTGCAAAACCAGCTAAACGACGTGTCGTCTGGTTCGATTCCACTGCTGCTGATTGCGCACATAGCCACCTGCGTCAACTACCTCCGTTCCATGCTCTTCGCCCTTCTTCAAACCCTAGGTCTCTCAAGGCTCCACACACATCAGATCGTCGACGATGGATTCTTCGCCACCGTCGGATCCGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTCGCCGCTAACAACCGATTCTTCTACAACTACGCCGTCGTCGACCGCGCCGACTCCGACGGCTGCGTCGTGTGCCAGAGCAACTTCAAGGAAGGGGAACAGGTACGGATGCTGCCGTGCCGCCACGTCTTCCACCGCCACTGCTTCGACGGCTGGCTCCATCACTACAAGTTCAACTGCCCGCTCTGTCGCTACCCGCTACTCTCTGACGAGCGCGTGGCACTCACGGAGCGCCGCGTCGGTCGCGAACTCGTCTCGTGGTTCTCCCTTCGGTGA 495 0.598 MGLQNQLNDVSSGSIPLLLIAHIATCVNYLRSMLFALLQTLGLSRLHTHQIVDDGFFATVGSGLAGLIMLSDQLAANNRFFYNYAVVDRADSDGCVVCQSNFKEGEQVRMLPCRHVFHRHCFDGWLHHYKFNCPLCRYPLLSDERVALTERRVGRELVSWFSLR 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc457g00001 164 CDD RING-H2_RHA2B 93 139 - -
Stsc457g00001 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 146 IPR013083 -
Stsc457g00001 164 SUPERFAMILY RING/U-box 83 143 - -
Stsc457g00001 164 PANTHER RING ZINC FINGER PROTEIN-RELATED 82 147 - -
Stsc457g00001 164 SMART ring_2 95 136 IPR001841 -
Stsc457g00001 164 Pfam Ring finger domain 95 137 IPR001841 -
Stsc457g00001 164 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc457g00001 Stsc-Chr457 17282 18633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc457g00001 1 163 C3H Transcription Factor Family AT1G15100 50.920 5.96e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc457g00001 K16282 - gmx:100803789 258.07