Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc4575g00001 ATGGCTGTTGCTGGATCTCATAGAAGTCTGCCTATCAACTTTGGTACCCCTGGGCTGGTTGGATTGGCCCTCTCATATGCAGCTCCTATCGTATCCTTGTTGGGGAGTTTTTTAACTAGTTTCACTGAAACAGAAAAGGAGATGGTTTCAGTTGAAAGAGCCCTTCAATACATGGACATTCCTCAAGAAGAACAAGGTGGATGCTTAAACTTGAACCCAGATTGGCCTAATCAAGGAGTTATTGACTTCCAGAATGTCACTTTGAAATATATGCCATCTTTGCCACCTGCAATCTGCAATCTTAGTTTTACTATTGCTGGAGGGACACAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTGACCCCAATATGTTCGGGCTCCATTTTAGTTGATGGCACAGACATTAGAAATATTCCTGTCAGAGAACTGCGTACACATTTGGCTATTGTGCCTCAGAGTCCGTTCCTGTTTGATGGATCATTAAGGGAGAACCTAGATCCATTAAAGATGAGTGATGACTTAAAAATTTGGGATGCTTTGGAGAAGTGCCACGTGAAAGAGGAAGTTGAAGTAGCTGGAGGGCTGGATATTCTCGTAAAGGAAGGAGGTATATCGTTTTCTGTTGGCCAGCGGCAACTTCTTTGCCTTGCACGTGCACTTCTTAAATCTTCAAAGGTTCTCTGTTTGGATGAATGCACTGCCAATGTGGACATTCAAACTGCTTCGCTTCTCCACACCACCATATCCAGTGAGTGCAAAGGCATCACAGTGATCACAATTGCTCACAGGATTTCAACTGTCTTAAGTATGGATAACATTCTGATTCTAGACCATGGCAACCTGGCTGAACAAGGAAATCCACAGGTTCTTCTAAAAGATGACTCATCATTATTTTCTAGTTTTGTTAAAGCTTCATCAATGTAA 957 0.4253 MAVAGSHRSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQGGCLNLNPDWPNQGVIDFQNVTLKYMPSLPPAICNLSFTIAGGTQVGIIGRTGAGKSSVLNALFRLTPICSGSILVDGTDIRNIPVRELRTHLAIVPQSPFLFDGSLRENLDPLKMSDDLKIWDALEKCHVKEEVEVAGGLDILVKEGGISFSVGQRQLLCLARALLKSSKVLCLDECTANVDIQTASLLHTTISSECKGITVITIAHRISTVLSMDNILILDHGNLAEQGNPQVLLKDDSSLFSSFVKASSM 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc4575g00001 318 ProSitePatterns ABC transporters family signature. 217 231 IPR017871 GO:0005524|GO:0016887
Stsc4575g00001 318 FunFam ATP-binding cassette (ABC) transporter, putative 68 315 - -
Stsc4575g00001 318 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 74 306 IPR027417 -
Stsc4575g00001 318 SUPERFAMILY ABC transporter transmembrane region 16 63 IPR036640 GO:0005524|GO:0016020
Stsc4575g00001 318 Pfam ABC transporter 100 245 IPR003439 GO:0005524
Stsc4575g00001 318 SMART AAA_5 107 291 IPR003593 GO:0016887
Stsc4575g00001 318 Gene3D ABC transporter type 1, transmembrane domain 5 65 IPR036640 GO:0005524|GO:0016020
Stsc4575g00001 318 CDD ABCC_MRP_domain2 79 298 - -
Stsc4575g00001 318 Gene3D - 67 316 IPR027417 -
Stsc4575g00001 318 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 16 316 - -
Stsc4575g00001 318 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 81 314 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc4575g00001 Stsc-Chr4575 1 2204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc4575g00001 79 314 Calmodulin-binding Proteins AT2G36910 30.290 5.84e-33 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc4575g00001 K05674 - gmx:100814181 529.635