Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc452g00001 | ATGGCTACTACTATGCTCTCACCAGCGAACCTTCTTTCACTCGCAGCTCCATCCCCAACTTCCTCTTCCCCAACCTTATACTTCAAACCTGCCACAAATCTCTCGCATCCATTTTCTCTTAAGTCGGTGCCTTCTCTTGTTGCCGGAACTTCCAAACGCAATAGATTCAGCGTTCGGAGACCTTTTGCGGTGGCCGCAGAAGAAGCCGCGGTCACCACATCGGTGGACCCTAAATCGGAAGCTGCAAGGAGGCTCTATGTTGGCAACATTCCTCGCACTGTCACCAACGATGAGCTCAAGAACATCGTTGAAGAGCATGGCGCTGTTGAAAAAGCTGAGGTTATGTATGATAAATACTCTGGGCGGAGTCGTCGCTTTGCATTTGTTACGATGAAAACTGTTGAGGATGCAAATGCAGTTGTTGAGAAACTTAATGGCACTGTAAGTTATATTGCAGAATTGTCTTACCTTTTAAGGGAAATTTTCTCAAAAGGAACTCTTGCACTTTTACAGGAAATCGGAGGACGTGAGGTCAAGGTAAATATAACCGAAAAACCTTTGTCAACAGCAGACACATCTTTCCTTCAGGCCGACGAGTCCAACTTTGTTGACAGTCCCCACAAGGTATATGTCGGAAATCTGGCCAAGACAGTAACATCAGATACACTTAAAACATTTTTCTCTGAGAAGGGAAAAGTTCTTAGTGCCAAGGTCTCACGGGTTCCGGGGACCTCAAAGTCGAGTGGCTATGGCTTTGTTAGTTTTTCTTCTGATGAGGATGTAGAAGCTGCAATCTCATCTTTCAACAATGCGTCATTAGAAGGGCAAACAATTCGCGTGAATAAGGCTTAG | 852 | 0.4531 | MATTMLSPANLLSLAAPSPTSSSPTLYFKPATNLSHPFSLKSVPSLVAGTSKRNRFSVRRPFAVAAEEAAVTTSVDPKSEAARRLYVGNIPRTVTNDELKNIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEDANAVVEKLNGTVSYIAELSYLLREIFSKGTLALLQEIGGREVKVNITEKPLSTADTSFLQADESNFVDSPHKVYVGNLAKTVTSDTLKTFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSSDEDVEAAISSFNNASLEGQTIRVNKA | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc452g00001 | 283 | PANTHER | OS02G0815200 PROTEIN | 31 | 282 | - | - | |
| Stsc452g00001 | 283 | SMART | rrm1_1 | 84 | 157 | IPR000504 | GO:0003723 | |
| Stsc452g00001 | 283 | SMART | rrm1_1 | 208 | 281 | IPR000504 | GO:0003723 | |
| Stsc452g00001 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 77 | 147 | IPR035979 | GO:0003676 | |
| Stsc452g00001 | 283 | CDD | RRM1_PSRP2_like | 84 | 187 | - | - | |
| Stsc452g00001 | 283 | SUPERFAMILY | RNA-binding domain, RBD | 201 | 283 | IPR035979 | GO:0003676 | |
| Stsc452g00001 | 283 | FunFam | 30S ribosomal protein 2, chloroplastic | 194 | 283 | - | - | |
| Stsc452g00001 | 283 | Gene3D | - | 192 | 283 | IPR012677 | - | |
| Stsc452g00001 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 83 | 185 | IPR000504 | GO:0003723 | |
| Stsc452g00001 | 283 | Gene3D | - | 48 | 191 | IPR012677 | - | |
| Stsc452g00001 | 283 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 207 | 283 | IPR000504 | GO:0003723 | |
| Stsc452g00001 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 85 | 148 | IPR000504 | GO:0003723 | |
| Stsc452g00001 | 283 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 209 | 279 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc452g00001 | Stsc-Chr452 | 3280 | 6404 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc452g00001 | 76 | 283 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 26.667 | 1.75e-13 | 68.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc452g00001 | K13126 | - | sind:105168752 | 311.612 |