Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc45060g00001 ATGCCAGATGATTCTAGAAGAAAATTATTAGACTGGGCAAAGCGCTTTCAAATTATTGGCGGAACAGCTCGAGGCCTAGTTTATTTACATCAAGATTCTAGGCTAAGAGTCATTCATAGAGATCTAAAAACTAGCAATATTCTTCTTGATAAAGACATGAACGCGAAAATATCAGACTTTGGTCTTGCTAGGACATTTGCCGGAGATCAAACTGAGGCCAGAACAAAGAGA 231 0.3853 MPDDSRRKLLDWAKRFQIIGGTARGLVYLHQDSRLRVIHRDLKTSNILLDKDMNAKISDFGLARTFAGDQTEARTKR 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc45060g00001 77 Pfam Protein kinase domain 14 71 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc45060g00001 77 FunFam Os07g0541700 protein 1 77 - -
Stsc45060g00001 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc45060g00001 77 Gene3D Transferase(Phosphotransferase) domain 1 3 77 - -
Stsc45060g00001 77 SUPERFAMILY Protein kinase-like (PK-like) 8 72 IPR011009 -
Stsc45060g00001 77 ProSitePatterns Serine/Threonine protein kinases active-site signature. 37 49 IPR008271 GO:0004672|GO:0006468
Stsc45060g00001 77 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc45060g00001 Stsc-Chr45060 23 253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc45060g00001 3 77 Receptor kinase-like Gene Family AT3G45860 66.667 2.89e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc45060g00001 Pkinase 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc45060g00001 - - aip:107611884 145.976