Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc44g00023 ATGGAGCTTGGGAACCTATGGTCCTCCCAACACCGCGAGGTGGAACAGGCCAGAGACTTCAAGAATAGCCCGTCCCCCCTCGCCCGTGTTAGGAAGATGATAAAGGCCGAAGAGGGTGTCAACCGGATCTCGGCTGAGGTGCCGATTGTCCTCGCTAAGGCATGCGATCTCTTCATCCGTAATACCGAAGACTTCAAGAATTGCATGTTCCTCCTCGCCCGCGTTAAGAAGATGATGAAGGCTAAAGAGGCGTCAACCGGATCTTGA 267 0.5393 MELGNLWSSQHREVEQARDFKNSPSPLARVRKMIKAEEGVNRISAEVPIVLAKACDLFIRNTEDFKNCMFLLARVKKMMKAKEASTGS 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc44g00023 88 SUPERFAMILY Histone-fold 12 60 IPR009072 GO:0046982
Stsc44g00023 88 Gene3D Histone, subunit A 1 62 IPR009072 GO:0046982
Stsc44g00023 88 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 60 - -
Stsc44g00023 88 MobiDBLite consensus disorder prediction 1 22 - -
Stsc44g00023 88 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 60 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc44g00023 Stsc-Chr44 168672 171049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc44g00023 6 59 CCAAT-HAP5 Transcription Factor Family AT3G48590 57.407 3.59e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc44g00023 - K08066 adu:107463451 95.5153