Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc44g00022 ATGGAATGTAATAAAGATGACGCCATAAAGGCTAAAGAGCTTGCTGAGAAGACTCTTCTTCAGAGGGACCTCAGCAGTGCAAAGATATTTGCAAAGAAAGCTCAAGACATGTATCCTAATCTTGATGGCCTTTCTCAGTTGCAGGCCACTATTGAGGTGTATGCTTCGGCCGAAAAAAAGGTTAACGGTGAAATTGATTGGTACAAGGTCCTTGGTGTTGAACGCAAGGCAGATGACCAAACAATTCGAAAACAATACAGGAAACTGGCTCTTATTCTGCACCCCGATAAAAATAAATCGGCAGGGGCAGATGAGGCATTTAATCTTATCACACAAGCATGGACTTGTTTGTCTGATAATGCCAAGAGAGTTGTGTATGACCAGAAGCTCAATTTTTCCGGTATATATTCTGGGAAACATTCTGTACCAGCTCATCAGAATGGTTTCTTTAGTAAGTTCAATCCTGTTATCTTGAAGAATAAGCATCAAGGACCTGCTACACATCCAAGTCAAACTAGAAGACCTCCGTTGTCGATGGACCTGACATTTTGGACCATGTGCTTTTCCTGCAGGACAAAGTTTGAATACGATGTTAAATATTTTAACGGCATACTCTCCTGCGTCAAGTGCAAGACGCCCTTTGTAGCTTCTGAGGCATTGCCCCCGCTTGTGTATAGAAATGCTTCATCTACTTCAAGCATTTCTCGTATGAACCAAAATAACCTTACCAGGATGGGAGCAAACAATCGTGTTTTGGGAAAGGTAGCAATTCCTGCTGTCAACTCATCATTTGGGTCAAGTCCTTTCTTCATGCCTGGTGGCAATTCCAGAATGCCGTCATTTTCTGCTGCTGCTGAAGCTCCTGGTGTTTTCAAAGTGCCATCTGATACTTTGAAGAGGGCACATGAAGCTTCAACACCCGACAATGCCCTTGCTGCTGAGAAAACTGGTGCTGCAGGTTCAGCATCTCATTCCTCTTCATTTGGTTCAAATTCTTCTCCGAAAGGAGATGTGTCGAGGAAAAGAATCCGCAAAAGTGAAGTCAAAGTAAACAGTGATAGGACATGTACACAAAACGGGGTAGCTTCTCAACACGAAGGAGTAAGCTTGGCAAATGAATCCGGATCCGAAAAGGATAATTCTGAACCTGGAAGGATGAGTGCTGCTGGAAACTACAAACGTAATGTTTTTTGGGAGATACCCCAACAGAAAATGAAGAAGATTCTGATGGAGAAGGCAAGAAATGAAATTCAGAAAAAGCTTGAAGAATGGATTGCTGCTTCTAAACCAAGGAATTCGGAAATGTCAAAGAATACTGCTGTAGAGATCATAGAGAAGGACAAGAAAAAGGCGCTAGATGGCATAGAGAAGGACAAGAAAAAGGTTACACATGGTGTAAAACCTGACATGAAAAATGCTATTGATGGTGCAAAACGTGGTGCACAAGCAATTGCTGATTCTGGTAACATTGGCAAAAAGCATATTCCTCCTGCTGATTCAGTCGAGCCTCATTTTTATGTCTTGATGAATGTTCCAGACCCGGACTTCCATGATTTCGATGGGGACCGTATTGAAAATGCTTTTGGTGCAAACCAGGTGTGGGCTGTTTATGATGACGACGATGGCATGCCGCGCTACTATGCTTTGATTAACGATGTGATCTCAAAGAAACCGTTCAGCATGAGAATTAGTTGGCTTAACTCGAAGACCAACAATGAATTGGCTCCAATAAAGTGGGTTAGTTCTGGTTTTCCCAAAACCTCTGGGGATTTCAGAATAAGCAAGCGTGCTGTTTATAACAGTCTTAACTCCTTTTCGCACAAGGTTCAATGGAAAAAAGGTGCAAGAGGGATTGTGCATATATATCCCAAGAAGGGGGATGTTTGGGCCCTATACCGGAACTGGTCTGCTGACTGGAACCAATTTACCAAAGACGAAGTCGTTCATAAGTATGACATGGTGGAAGTGCTGGAAGACTACAATGAGGAGCGAGGCGTGAATGTTGCTCCACTTGTTAAAGTTCCGGGTTTAAAGACAGTGTTTCGCCAGAACGAGGATCCAAGAAGAATAAGAAACATTCCGAAGGCAGAGATGTTCCGTCTCTCGCACCAAGTACCTGCATACTTGCTCACTGGTCAAGAAGGCCATAATGCTCCTAAAGGCTGCTTGGAGCTTGACCCTGCAGCTACACCTATGGAACTTCTTCAAGTATTCACAGAAATACCAGAGCAAGAACCAGTACCGATCAAGAGGAGTCGGAAAAGTAAGCAAGAAGATTCTGTTAAGGAGATTCCAAGAAAGGCAGTGGCTGAAGCAATTGGAAAGAAAGATGGTAAGCCTGAGATTTTGTATGTATATAGGAGAAGACATCTGAGGGAAAAGAGAGCCATGTAA 2394 0.4307 MECNKDDAIKAKELAEKTLLQRDLSSAKIFAKKAQDMYPNLDGLSQLQATIEVYASAEKKVNGEIDWYKVLGVERKADDQTIRKQYRKLALILHPDKNKSAGADEAFNLITQAWTCLSDNAKRVVYDQKLNFSGIYSGKHSVPAHQNGFFSKFNPVILKNKHQGPATHPSQTRRPPLSMDLTFWTMCFSCRTKFEYDVKYFNGILSCVKCKTPFVASEALPPLVYRNASSTSSISRMNQNNLTRMGANNRVLGKVAIPAVNSSFGSSPFFMPGGNSRMPSFSAAAEAPGVFKVPSDTLKRAHEASTPDNALAAEKTGAAGSASHSSSFGSNSSPKGDVSRKRIRKSEVKVNSDRTCTQNGVASQHEGVSLANESGSEKDNSEPGRMSAAGNYKRNVFWEIPQQKMKKILMEKARNEIQKKLEEWIAASKPRNSEMSKNTAVEIIEKDKKKALDGIEKDKKKVTHGVKPDMKNAIDGAKRGAQAIADSGNIGKKHIPPADSVEPHFYVLMNVPDPDFHDFDGDRIENAFGANQVWAVYDDDDGMPRYYALINDVISKKPFSMRISWLNSKTNNELAPIKWVSSGFPKTSGDFRISKRAVYNSLNSFSHKVQWKKGARGIVHIYPKKGDVWALYRNWSADWNQFTKDEVVHKYDMVEVLEDYNEERGVNVAPLVKVPGLKTVFRQNEDPRRIRNIPKAEMFRLSHQVPAYLLTGQEGHNAPKGCLELDPAATPMELLQVFTEIPEQEPVPIKRSRKSKQEDSVKEIPRKAVAEAIGKKDGKPEILYVYRRRHLREKRAM 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc44g00022 797 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Stsc44g00022 797 PRINTS DnaJ domain signature 68 86 IPR001623 -
Stsc44g00022 797 PRINTS DnaJ domain signature 102 122 IPR001623 -
Stsc44g00022 797 PRINTS DnaJ domain signature 86 101 IPR001623 -
Stsc44g00022 797 Gene3D DnaJ domain 64 167 IPR036869 -
Stsc44g00022 797 PANTHER BNAC03G44070D PROTEIN 1 731 - -
Stsc44g00022 797 MobiDBLite consensus disorder prediction 746 765 - -
Stsc44g00022 797 MobiDBLite consensus disorder prediction 314 388 - -
Stsc44g00022 797 Pfam DnaJ domain 66 127 IPR001623 -
Stsc44g00022 797 MobiDBLite consensus disorder prediction 337 351 - -
Stsc44g00022 797 Pfam Domain of unknown function (DUF3444) 509 714 IPR024593 -
Stsc44g00022 797 SMART dnaj_3 65 122 IPR001623 -
Stsc44g00022 797 MobiDBLite consensus disorder prediction 352 377 - -
Stsc44g00022 797 MobiDBLite consensus disorder prediction 319 336 - -
Stsc44g00022 797 CDD DnaJ 66 119 IPR001623 -
Stsc44g00022 797 SUPERFAMILY Chaperone J-domain 63 155 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc44g00022 Stsc-Chr44 159392 161785 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc44g00022 4 224 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.188 8.79e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc44g00022 - - ahf:112772645 1274.23