LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc44g00021	ATGCAAATCGTCGCCGCCATCAACTTCGTCGACGACTCATCTCTCATCTTCGTCATGGCCGTTGGACCCGCACTCATCTCCTTAGCAACCATGTTCATCATAAGACCCCTCACAGATCACTTCAAGCAATCTACGCCGTCGGATGATGATTCCGGCTTCAATTTTATCTACGGCGTTTCGGTTCTCTTGGCTGCTTACCTTCTCAGCATTTTGTTGTTACAAAACATGTTGGATTTGGACCATGAATCCGTCACATTGTTGGCAATTGTTTTGATCGTTCTCATGTCGCTTCCCATTTTGGTTCCTATAGTAATTGTTTTCTTCTTAGAACCCAAAAGAAGTAGTAGTGTTGATGATCATGAACAAGAAAGTGAAGCATGGTTTCTTATTGATGAACCATCTATGGATGTAGCAACTGCCTCCATGGACATGCATGGGGAAGAAGATGATGATGAAACTCGTGTTAATGCCACTCATGTTGATGAAGATGATGATGGTGATCATAAGCCTTCAGAAACGTCTGTCGGAGTTTCAAGTATGAATTGGTCAAGGGGCAATACTATCATCCGATCAGAAGCTAATAAATTTGTGGAAGGAATAAAGAAAATGATGAAGAAGAAGAATGGTAGGAGAATAGGAGAGGAATTCAGCATAAGAGAAGCAGTTGTGAATGGTGAGTTATGGATAATGTTCTTGTCTCTAAGCATGAGTGGTGGATCTGGCTTGACAGTCATAAACAACATTGGTCAAATGTGCCAATCTTTGGGAGACAACAATGTGAATGTATATGTTTCACTGCTTAGTATATGCAGTGCCCTTGGTCGTGTTGCTGGTGGTTATTCCTCAGAGCTTATAGTAAGAAAATTTGGGCATTCTAGACTTGTTGCATTGGTTGTACTTCAGGGAATGATGGCATTGGGTCTCTCCTACTATGCCATGGGTTTAGTTGGTCAAATCTATGTAGTAGCCATAACTATAGGTTTTGGCTATGGTGCACACTGGTCAATTTCCATAGCTGCAGCTTCAGAGCTATTTGGATTGAAGAACTTTGGGACCATATTCAATTTTCTTGCAATGTCTTGTCCTGGTGGAACCCTAATCTTGTCTGGATTTGTAGCAAGCACAATATATGACTACTATGCTGCACAGCAACAAAGAAATGATGATGAAGAGTTGCTTCTTGTTTGTGAAGGAAACATATGCTTTTCTTTGACATGTTGGATCTTAGCAATAGTTTGCATAGTAGCTGCTGTTTTGAACATGATCTTGGTTTGCAGGACTAAGATGTTGTATGCCCAAATTTATAGAAAGTCTATAATTATCTAG	1326	0.4057	MQIVAAINFVDDSSLIFVMAVGPALISLATMFIIRPLTDHFKQSTPSDDDSGFNFIYGVSVLLAAYLLSILLLQNMLDLDHESVTLLAIVLIVLMSLPILVPIVIVFFLEPKRSSSVDDHEQESEAWFLIDEPSMDVATASMDMHGEEDDDETRVNATHVDEDDDGDHKPSETSVGVSSMNWSRGNTIIRSEANKFVEGIKKMMKKKNGRRIGEEFSIREAVVNGELWIMFLSLSMSGGSGLTVINNIGQMCQSLGDNNVNVYVSLLSICSALGRVAGGYSSELIVRKFGHSRLVALVVLQGMMALGLSYYAMGLVGQIYVVAITIGFGYGAHWSISIAAASELFGLKNFGTIFNFLAMSCPGGTLILSGFVASTIYDYYAAQQQRNDDEELLLVCEGNICFSLTCWILAIVCIVAAVLNMILVCRTKMLYAQIYRKSIII	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc44g00021	441	MobiDBLite	consensus disorder prediction	144	171	-	-
	Stsc44g00021	441	PANTHER	UNCHARACTERIZED NODULIN-LIKE PROTEIN	2	432	-	-
	Stsc44g00021	441	Pfam	Nodulin-like	2	103	IPR010658	-
	Stsc44g00021	441	MobiDBLite	consensus disorder prediction	144	178	-	-
	Stsc44g00021	441	Gene3D	MFS general substrate transporter like domains	224	429	IPR036259	-
	Stsc44g00021	441	SUPERFAMILY	MFS general substrate transporter	51	429	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc44g00021	Stsc-Chr44	143355	146547	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc44g00021	2	438	Nodulin-like Gene Family	AT5G14120	40.319	8.37e-94	292

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc44g00021	-		-	gmx:100817909	410.994