Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc44g00003 ATGGAAAATGGGCATGGCTCAAAATTTGAACTTGTTGTAAGGCAAATAGGAGAACCAATTAGAGTGAAGCCTTCAAAAGAAACAAAGAAGGGACTCTATTACCTTTCAAACCTTGACCAGAACATTGCTGTTCCAGTGAGAACAGTTTATTGCTTCAAGTCAAGTTCAAGAGGGAATGAAGAAGCTCCAAGAGTAATCAAAGATGCACTCTCAAAGATTCTTGTCCCTTATTACCCCATGGCAGGTACCTTGATTCTAAGCAAAGAAGGGAAGCTTATAGTGGATTGCACAGAAGAGGGTGCAGTGTTCCTTGAGGCTGAAGCAGAGTGTGATATTGAAGAAATTGGAGATTTAACAAAACCAGATCCTCATAATCTTGGAAAACTTGTTTATAGTGTTCCTGGTGCTAAACATATTCTTGAGATGCCTCTTATGACTGCTCAGGTGACAAAATTCAAATGTGGAGGGTTCACTTTGGGACTAAACATGATCCATTGCATGAAAGATGGAATATGTGCCATGGAATTTGTGAATGCATGGAGTGATGTAGCAAGAGGCTTGAGCTTGAAGGTACCTCCATACCTCGACCGATCGATACTCAAAGCGCGCGACCCTCCCAAGATCGAATTCGAGCACAAAGAATTCGAGCAAATAGAAGACATATCAAACACTAACAAGCTTTATGAGGAAGAAGAGATGATCTACAAAGCATTCACCTTTGGCCCTGAAAAGCTTGAACACCTTAAGAAAATGGCTACCCAAGATGGGGTTTTGAAGAAATGCACAAGCTTTGAAGCTCTCTCAGGGTTTGTATGGAGGGCAAGAAGTGAAGCCCTAAGAATGAAACCTGATCAAAAGACAAAATTGCTCTTTGCAGTTGATGGAAGGTCCAAGTTTGTTCCACCAATACCTGAGGGGTATTTTGGGAATGCAATTGTTCTAACAAACTCTCTTTGCAAGGCTGGTGAATTAGTAAATTGCCCTTTGTCACATTCAGTGAGTTTGGTTCACAAGGCAATTGAGATGGTGAATGATAGTTACATGAGGTCAGCAATTGATTATTTTGAAGTCACAAGAGAAAGGCCTTCTTTGGCAGCTACACTTTTGATCACAACATGGACAAAGTTGTCATTTCACACCACAAATTTTGGTTGGGGTGATCCTTTGTGTTCTGGGCCTGTTACTTTGCCTGAGAGGGAAGTTGTTTTGTTCTTGTCTCATGGTCATGGAAGGAGAAGTGTTAATGTTCTTATGGGCTTGCCTGCTTCTGCCATGAACACTTTTGAGGAATTGGTTAACCAAGTTTGA 1308 0.4121 MENGHGSKFELVVRQIGEPIRVKPSKETKKGLYYLSNLDQNIAVPVRTVYCFKSSSRGNEEAPRVIKDALSKILVPYYPMAGTLILSKEGKLIVDCTEEGAVFLEAEAECDIEEIGDLTKPDPHNLGKLVYSVPGAKHILEMPLMTAQVTKFKCGGFTLGLNMIHCMKDGICAMEFVNAWSDVARGLSLKVPPYLDRSILKARDPPKIEFEHKEFEQIEDISNTNKLYEEEEMIYKAFTFGPEKLEHLKKMATQDGVLKKCTSFEALSGFVWRARSEALRMKPDQKTKLLFAVDGRSKFVPPIPEGYFGNAIVLTNSLCKAGELVNCPLSHSVSLVHKAIEMVNDSYMRSAIDYFEVTRERPSLAATLLITTWTKLSFHTTNFGWGDPLCSGPVTLPEREVVLFLSHGHGRRSVNVLMGLPASAMNTFEELVNQV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc44g00003 435 Gene3D - 15 215 IPR023213 -
Stsc44g00003 435 FunFam Tryptamine hydroxycinnamoyl transferase 219 433 - -
Stsc44g00003 435 Pfam Transferase family 21 430 - -
Stsc44g00003 435 FunFam Spermidine hydroxycinnamoyl transferase 12 215 - -
Stsc44g00003 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 431 - -
Stsc44g00003 435 Gene3D - 216 435 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc44g00003 Stsc-Chr44 23823 28850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc44g00003 15 435 Monolignol Biosynthesis Gene Families AT5G48930 34.703 4.01e-89 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc44g00003 K15400 - gmx:100794490 698.353