Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc44g00002 ATGCTTATGCGGAAATCATCATTATCATCAGCATCGTCCATGATGTTTAAAGTGAGAAGAAGTCCAGCAAAGATAGTGGCACCTGCAGGGCCAACTCCCCATGAACTTAAGCTTCTCTCCGACATTGATGACCAACCTGGTATTCGTCTCCATGTTCAATTGGTGCACTTCTATTCTTATAACCCTTCAATGGCAGGGAAAGATCCTGTCCATATCATTAAGGAAGCATTGTCCAAAGTACTTGTGTTCTATTATCCCTTAGCTGGGAGGCTTAGGGAAGGAACTAATGGCAAACTTATGGTGGATTGCACTGCCGAAGGTGTGTTGTTCATCGAAGCTGATGCAGATGTTACACTTGATCAGTTTGGTGTTGATATTATGCCTCCATTCCCTTGCTCTCATGAGCTCCTTTATCTTGCTCCATCTTTTGACAAAGGAATTATTAACACTCCACTCCTGCTTATTCAGGTGACACGTCTGAAATGCGGTGGCTTTATCTTTGCTATCCGTACGAACCACACAATGTATGATGGAGCTGGAATGGGTCTATTCTTGAACGCCATTGCAGAAATAGCCCAAGTGCATCAAAACCTTCCATCACCCCAGTGTGGTGTAGGGATCTTCTTTGTGCCAGAGACCCACCAAGAGTTACATCCCTCCTCCCTAAATACCAACAACAACAACAACCGATTCATGACCACAAAAGTCTCTCTTCCTCCAAAGCTTGCAAGGCTTCCTTCTTCTTTGGCCCAAAAGAGATCAATGCATTGCGCCACCTCTTCCCTCCTCACCTTGCTCATTCTTTCTCCACCTTTGAGGTTCTCACTGCATTCTTGTGGCGTTGTCGTGCAGCTGTTTAATCCTCCATTACCTGAAGGTTATTATGGCAACACTTTTGTAGTACTTTGGGTAGTTTCCACCGTGGGGATGCTATGTGGGCAGCCATTGAGCTATGCATTGGAGTCGGTGAAGAAATCAAAGAATGAAGCAAGTGAAGAATATGTGCACTCTACTATCGATCGATGGGCCGTTATGGGAAAACCTCCTTTTACACCCTTTGCATCGGCACCAGAGACATTTGTGGTGTCAGATAACAAAAAATCTGCATTTAGAGATGTGGATTTCGGATGGGGTAAGCCTTTGTATTCTGGTCTTGCCGAGATTGGGAATAAGGCAGGTGTGAGTTGCTATTTTGCACATACTAACTCTAAAGGAGAGCATGGTAGACTGGTTTTCATTTGCCTGCTAGAAGAAGAGATGAAAAGGTTCCAAAAAGAGCTTAATGGAATACTTCCATCAACCATGAAGAAAATTCTATCAATTCAGTTTCCAAGCTCTAGTGGATGGCTGGCTGATCTGAATATTGAATATGCATGCGTGTCAACTTATAATTGGTTTTAA 1401 0.4361 MLMRKSSLSSASSMMFKVRRSPAKIVAPAGPTPHELKLLSDIDDQPGIRLHVQLVHFYSYNPSMAGKDPVHIIKEALSKVLVFYYPLAGRLREGTNGKLMVDCTAEGVLFIEADADVTLDQFGVDIMPPFPCSHELLYLAPSFDKGIINTPLLLIQVTRLKCGGFIFAIRTNHTMYDGAGMGLFLNAIAEIAQVHQNLPSPQCGVGIFFVPETHQELHPSSLNTNNNNNRFMTTKVSLPPKLARLPSSLAQKRSMHCATSSLLTLLILSPPLRFSLHSCGVVVQLFNPPLPEGYYGNTFVVLWVVSTVGMLCGQPLSYALESVKKSKNEASEEYVHSTIDRWAVMGKPPFTPFASAPETFVVSDNKKSAFRDVDFGWGKPLYSGLAEIGNKAGVSCYFAHTNSKGEHGRLVFICLLEEEMKRFQKELNGILPSTMKKILSIQFPSSSGWLADLNIEYACVSTYNWF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc44g00002 466 Gene3D - 12 223 IPR023213 -
Stsc44g00002 466 PANTHER ACYL TRANSFERASE 4 15 428 - -
Stsc44g00002 466 Pfam Transferase family 287 426 - -
Stsc44g00002 466 Pfam Transferase family 19 218 - -
Stsc44g00002 466 Gene3D - 273 427 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc44g00002 Stsc-Chr44 16277 19069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc44g00002 286 427 Monolignol Biosynthesis Gene Families AT5G48930 25.850 4.60e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc44g00002 K19861 K13610 gmx:100795237 394.815