Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc447g00008 ATGTTTGTGGCAGCTTCTTCTTCTTCCTCCTCCTCTAATTCTAATAAAAATGGCAGCACCATATGTGACCAATACAGTAGAGTGTGCGGACCAAATGGGAACTGCGATGAGGCAAAAACTTGTGTGTGTTTGGATGGTTTCACACCCAAGTCACCAACTGATTATGCTTATTACTTGAACTTCACACAGGGATGTGTAAGAAACACACCGTTGAATTGTAACACTGATGTGTTTGTTAGATATTCTTCGCTTACAGAACCAAGTGGTGGTTATTCTCTGTCCAACCAAGAGGATTGCATGGGAAAGTGCAAGAGCAACTGTTCTTGTATGGCCTATGAAGTAATTGGGGGTGGATGCAAGTTCTGGAACGGTGATTTGTTTGATGTTAGATTGGTCAAGCAAGGTGGACAAGATCTTTATATTCGGATGGCAGCTTCAGAGGAACAAGGGAAAAAGCACGGGAGAAATGAGGGAGTGGTGGTAGGAATAGTTGTTGGGGGCATTCTCGTGATTTCCATCATAATTGCTTTGTGGTACATTCTCAAAAAAAGAACAGCTTCAAGAGCATTGGAACATGTAAGGATTGGCGAGATTATTACCCATCACACCAATGTACAAAAGGAAGATATGGGGCTTCCATTAATTGATATGTCAAGAATAGTTGTTGCCACTGATAATTTCTCTCCCAATAATAAGCTTGGAGAAGGTGGTTTTGGCCCAGTATACAAGGGTATATTAGATGATGGACAACAAATTGCTGTTAAGAAGCTTTCAAGTAGTTCCGGACAAGGACTAAATGAATTCAAAACGGAAGTAAAGCTAATAGCTAAACTCCAGCATCGTAATCTTGTAAAGCTTTTGGGATGTTGCATCCAAGATGAGGAAAATTTGCTAATATATGAATACATGCCTAATAAAAGCTTGGACTATTTTATTTTTGATGAGGTGCGAAGGAGTGTCTTAGATTGGTCTAAGCGTTTTAACATTATTACTGGAATTGCCAAAGGCTTGCTGTATCTTCATCAAGATTCAAGATTGCGGATTGTACATAGAGATCTTAAAACAAGTAATATTCTATTAGATACTAAGATGGAACCGAAAATTTCAGACTTTGGTTTAGCTAGATGTTTTGGAGGTGATCAAAGTAAAGCAAATACAATTACAATCGTTGGAACTTTGTAA 1182 0.3875 MFVAASSSSSSSNSNKNGSTICDQYSRVCGPNGNCDEAKTCVCLDGFTPKSPTDYAYYLNFTQGCVRNTPLNCNTDVFVRYSSLTEPSGGYSLSNQEDCMGKCKSNCSCMAYEVIGGGCKFWNGDLFDVRLVKQGGQDLYIRMAASEEQGKKHGRNEGVVVGIVVGGILVISIIIALWYILKKRTASRALEHVRIGEIITHHTNVQKEDMGLPLIDMSRIVVATDNFSPNNKLGEGGFGPVYKGILDDGQQIAVKKLSSSSGQGLNEFKTEVKLIAKLQHRNLVKLLGCCIQDEENLLIYEYMPNKSLDYFIFDEVRRSVLDWSKRFNIITGIAKGLLYLHQDSRLRIVHRDLKTSNILLDTKMEPKISDFGLARCFGGDQSKANTITIVGTL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc447g00008 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 303 393 - -
Stsc447g00008 393 SMART ntp_6 73 143 IPR003609 -
Stsc447g00008 393 Gene3D Transferase(Phosphotransferase) domain 1 303 393 - -
Stsc447g00008 393 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 192 302 - -
Stsc447g00008 393 SUPERFAMILY Protein kinase-like (PK-like) 211 392 IPR011009 -
Stsc447g00008 393 ProSiteProfiles Protein kinase domain profile. 227 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc447g00008 393 SMART serkin_6 227 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc447g00008 393 Pfam PAN-like domain 73 129 IPR003609 -
Stsc447g00008 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 348 360 IPR008271 GO:0004672|GO:0006468
Stsc447g00008 393 Pfam Protein kinase domain 230 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc447g00008 393 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 392 - -
Stsc447g00008 393 CDD PAN_AP_plant 69 144 - -
Stsc447g00008 393 ProSiteProfiles PAN/Apple domain profile. 73 144 IPR003609 -
Stsc447g00008 393 Gene3D Phosphorylase Kinase; domain 1 189 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc447g00008 Stsc-Chr447 36364 38129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc447g00008 75 392 Receptor kinase-like Gene Family AT4G04500 42.025 1.36e-77 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc447g00008 Pkinase 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc447g00008 - - aip:107610641 521.546