Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc447g00006 ATGAGAAACTTCAATCTTATTACTATTATTATATCAATCATCAGTGTCTATCTTCTTTTTCAAATCTCCAAAAGCATAGCAGCAGAAACTGATAGCATCACTAACTCGCAGTCTCTAAGTAAAAACCAGAGCATAGTGTCCAAGAAAGGAGAATTTGAACTTGGTTTCTTCACTCTTGATAACTCTACCAACCATTATTACCTTGGCATTTGGTACAAAAGAATCCCAGGTCAAACCGTTGTATGGGTCGCAAACCGTGAAAAACCCGCCACAAATCCCAACTCTCTTCAATTGATTATAAACAACACACTTCTCCTTAGGCAAGACAGCAACACTGTTCTATGGTCTGTGAACATTACAAGAAAGCTAAAGAATCCAATTCTGCAACTCTTGGATTCAGGAAACCTTGTTCTAACAGAAGAGAATAAGTATCTATGGCAAAGCTTTGATTTCCCTGGCAATACACTCTTGCAAGGGATGAAGCTTGGTAAGGATTTGAAGACTGGTTTAGATAGGCGCGTAACGGCATGGAAGAGTAGCAAAGATCCTTCTCCAGGAACCTTGAATTGGGGAATGGATGTGACTATGTGGCCACAACCAATGCAAAGAGTAGGATCAAAGAAACAATTCAATTCTGGACCATGGATTGGACTAGGCTATGGCAGCAAACCAACGACAAAACGCCAATCATTTTTCAGTTTATTTTTCATCTCCAATGAGGATGAAGTGTACTTCGGATTCCACCTTGATAACAACTCTGTTCCAGTTAGGATGGTGTTGGATCAAGCCACCTCCAGGCGTCTCTATATGGTGTGGATTGATTCTGATCAAGAATGGCAGGTCTATGTTTCTCTGCCGAGAGATTTTTGTGAGAGTTATAGTGTTTGTGGTCCTAATTCCAACTGTGATTGGAACAAGTCCGTTGCTGAAGCTTGTGGTTGCTTGAGAGGGTTTAGGCCTAACAGCGCAGGAGGTTGCTTGCGCGACAAGCCACTGAATTGCGAAAGCGATGGGTTTGTGAAGTATGTGAAGATGAAAGTGCCTGACACTGAGAATTGCTGGTACTTGAATCAGAGCATGAACCTTGATGAGTGCAGAGAGAAATGCTTGAGGAATTGTTCTTGTACGGCTTATGCGAATTCGGATATTAGAGGGGAAGGTAGTGGCTGTGCTTTGTGGTCTGGTGATCTTAATGACTTGAGGATTCTACCAGATGCAGGCCAAGATTTGTACATTAGAGTGCCAGCTTCAGAGTTAGCTTTCTGTTTGATATGGAAAAGAAGAAAAAAGGCTATTCTGAACGTGGATCAATCTAAGGAAGAGCAAGAGGAAGATCCAGAGGTTAAATTCTATGACCTGTCAGTTATAGCTTCTTCCACAGATAACTTTTCAGACAAAAACAAGCTTGGAGAAGGTGGTTTTGGACCTGTCTTCATGGGAACATTGGAAAATGGACAAAGAATAGCAGTTAAGAGGCTTTCAACTGGTTCTGGACAAGGGCTCAATGAATTTAAGAATGAAATTGCATTAATTGCTAAACTTCAGCATCGTAATCTTGTCAAACTACAAGGATATTGCATTCAGAATGAAGAGAAATTACTTATATATGAATATATGCCTAACAAGAGCTTGGATTTCTTTATATTTGAACAAACACAAAGAATGGTTTTGGATTGGCCTACAAGATTCAATGTAATACGTGGCATAACAAGAGGTCTTCTTTATCTTCATCAAGATTCAAGACTTACAGTTATTCATAGAGATCTCAAAGCAAGTAATATTTTACTTGACCACAAGATGAATCCAAAGATTTCCGACTTTGGTTTAGCTAGAATTTTGGGAGAAGACCAAGCCACAGAAATTACACGTCGCATTGTTGGAACATATGGATACATAGCACCGGAATATGCAATTGACGGAAACTTCTCAGTAAAATCAGATGTCTATAGCTTTGGTGTTTTGTTGCTGGAGATAGTATCAGGAAAGAGAAACAGAGGAGACCAACATCAAAACAAACATACAAACCTTACTGAATACGCATGGAAGTTGTGGATGGAAGGAAGAGCTTTAGAGTTGATAAGTGAAGACATAAAAGAATCATGCAATGGGTCTGAAGCATTGAGATGCATCCATATAAGTTTTCTGTGTCTTGAACAGCATCCACATGACAGACCAAGCATGTCATCTGTGGTTATGATGTTAAGCAGTGAAATTTGCTTGCCTAAACCAAAACAACCAGCTCTTTTTGTTGGAGAATATTCTTCATCAAATAAGACTAATTTAGCTTCTGTCAATGAATTAACTATGTCCATTTTAGAACCACGTTAA 2328 0.3939 MRNFNLITIIISIISVYLLFQISKSIAAETDSITNSQSLSKNQSIVSKKGEFELGFFTLDNSTNHYYLGIWYKRIPGQTVVWVANREKPATNPNSLQLIINNTLLLRQDSNTVLWSVNITRKLKNPILQLLDSGNLVLTEENKYLWQSFDFPGNTLLQGMKLGKDLKTGLDRRVTAWKSSKDPSPGTLNWGMDVTMWPQPMQRVGSKKQFNSGPWIGLGYGSKPTTKRQSFFSLFFISNEDEVYFGFHLDNNSVPVRMVLDQATSRRLYMVWIDSDQEWQVYVSLPRDFCESYSVCGPNSNCDWNKSVAEACGCLRGFRPNSAGGCLRDKPLNCESDGFVKYVKMKVPDTENCWYLNQSMNLDECREKCLRNCSCTAYANSDIRGEGSGCALWSGDLNDLRILPDAGQDLYIRVPASELAFCLIWKRRKKAILNVDQSKEEQEEDPEVKFYDLSVIASSTDNFSDKNKLGEGGFGPVFMGTLENGQRIAVKRLSTGSGQGLNEFKNEIALIAKLQHRNLVKLQGYCIQNEEKLLIYEYMPNKSLDFFIFEQTQRMVLDWPTRFNVIRGITRGLLYLHQDSRLTVIHRDLKASNILLDHKMNPKISDFGLARILGEDQATEITRRIVGTYGYIAPEYAIDGNFSVKSDVYSFGVLLLEIVSGKRNRGDQHQNKHTNLTEYAWKLWMEGRALELISEDIKESCNGSEALRCIHISFLCLEQHPHDRPSMSSVVMMLSSEICLPKPKQPALFVGEYSSSNKTNLASVNELTMSILEPR 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc447g00006 775 FunFam Receptor-like serine/threonine-protein kinase SD1-8 25 149 - -
Stsc447g00006 775 CDD B_lectin 36 152 IPR001480 -
Stsc447g00006 775 Pfam Protein tyrosine and serine/threonine kinase 466 733 IPR001245 GO:0004672|GO:0006468
Stsc447g00006 775 ProSitePatterns Serine/Threonine protein kinases active-site signature. 584 596 IPR008271 GO:0004672|GO:0006468
Stsc447g00006 775 SMART ntp_6 334 414 IPR003609 -
Stsc447g00006 775 Gene3D Transferase(Phosphotransferase) domain 1 539 740 - -
Stsc447g00006 775 Gene3D Phosphorylase Kinase; domain 1 424 538 - -
Stsc447g00006 775 SUPERFAMILY Protein kinase-like (PK-like) 446 756 IPR011009 -
Stsc447g00006 775 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 183 IPR036426 -
Stsc447g00006 775 PIRSF SRK 1 435 IPR024171 GO:0004674
Stsc447g00006 775 PIRSF SRK 419 775 IPR024171 GO:0004674
Stsc447g00006 775 CDD STKc_IRAK 469 734 - -
Stsc447g00006 775 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 427 538 - -
Stsc447g00006 775 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 725 - -
Stsc447g00006 775 SMART blect_4 36 152 IPR001480 -
Stsc447g00006 775 Pfam D-mannose binding lectin 79 178 IPR001480 -
Stsc447g00006 775 Pfam S-locus glycoprotein domain 210 321 IPR000858 GO:0048544
Stsc447g00006 775 SMART serkin_6 463 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc447g00006 775 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 539 742 - -
Stsc447g00006 775 ProSiteProfiles PAN/Apple domain profile. 334 415 IPR003609 -
Stsc447g00006 775 Pfam PAN-like domain 334 400 IPR003609 -
Stsc447g00006 775 CDD PAN_AP_plant 331 415 - -
Stsc447g00006 775 Gene3D - 24 149 IPR036426 -
Stsc447g00006 775 ProSiteProfiles Protein kinase domain profile. 463 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc447g00006 775 ProSiteProfiles Bulb-type lectin domain profile. 30 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc447g00006 Stsc-Chr447 31135 34137 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc447g00006 419 775 Receptor kinase-like Gene Family AT4G23140 48.404 6.60e-122 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc447g00006 PK_Tyr_Ser-Thr 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc447g00006 - - ahf:112769120 1089.72