Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc447g00003 ATGAAGTTTGGTTTGGATTTGAGAACTGGTCTTAATAGGAAATTAACAGCTTGGAAAAGTGTTGATGATCCTTCTCCTGGGGATTTCTCTTTTAGCATGGTTTTACACAATTACCCTGATGCATACATGATCAAGGATGGGAAAAAGTACTATAGGAGTGGACCATGGAATGGCCTTCACTCAAGTGGTTCACCACAAGTAAGATCCAACCCCATTTATGACTACAAGTTTGTTTTCAACAAGGATGAACTTTACTACACCTACAGCATGAAGAACTCTTCTTCTATCTCAAGGATTGTGCTGGATGGAACAAACTATGTTCGGCGGCGATATATGTGGATTGAATCTGACAAAAGATGGCAGACATACACATCAGTGCCATTGGACTTGTGTGACACTTATGCAATTTGTGGAGCTTATGGAAGTTGTGTTATCACAGATTCACCAGTTTGTCAATGTTTGAAAGGGTTCAAGGCCAAGTCACCTAAAGCATGGAACTCAATGGATTGGTCTCATGGATGTGTGAGGATCAAGCCACTGAGCTGCAAAGACAAAGAAAAAGATGGATTTGCGAAGATATCCGGACTAAAAGTACCTGATACTACACATAGTTGGTTGGATCAGACAATTGGGTTGAAAGAATGTAGAGCAAAGTGCCTGAACAATTGTTCTTGCATGGCTTATGTAAATTCAGATGTTAGAGGAAAAGGAAGTGGTTGTGCCTTGAGGTTTAGTGATCTAATTGACCTCAGACAACTATCAGCTGGAGGGCAGGACCTATATGTTAGAATGGATGCTTCAGAGTTAGCAGAGGTCGAAGTTAGCCACAAGAAGGATCGAGTCCTAGTGGCAGTAATAATTCCTCTGGCCATAGCAGCAGTTTCTGGCATACTCATATCCGGTGGGTGCTATAAAAAGAAGTCAAGAAAAAAGGTTAAAGAGAAATTAAGCTTTGATATGCAAGGAGATCAAAACAGTAGAATGTTAGTGGATGATATGGATCTGCCAGTTTTTGGCTTGTCAACAATTGCCAAGGCCACTAGCAACTTTGCAATCATGAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATACAAGGGAATGCTAGAAGATGGGCCAGAAATTGCAGTGACGAGACTTTCAGCAAGCTCAGGACAAGGAATTAATGAATTCAAGAATGAAGTAAAATTAATTGCGAAACTTCAACACCGTAATCTTGTAAAGCTTCTAGGATGTTGCATTGAAGAAGAGGAAAAAATGTTGGTTTATGAATACATGCCTAACAGTAGTTTGGACTCCTTTATTTTTGATCAGCAGAGAAGTGAATTACTAGATTGGTTAAAGCGTTTCAATATTATATGTGGAATTGCTAAGGGTCTTCTCTATCTTCATCAAGACTCCAGACCGAGGATTATTCACAGAGATCCCAAAGCAAGTAATGTTTTACTTGATAATGAGTTAAATCCTAAGATTTCAGATTTCGGCATGGCTGGCATTTTTGGGGGAGATCAAAATGAAGTAAACACAAAGAGAATAGTTGGGGCTTATGGTTACATGGCACCGGAATATGCTAGTGATGGGCACTTTTCAGTGAAATCTGATGTTTTTAGCTTCGGTGTTTTGTTGCTGGAGATCATATCTGGGAAGAGAAGTAGAGGATACTACAATCAAAACACAAGCCACAATCTCATTGGCCATGCATGGAAACTGTGGAAGGAAGGAATGCCACTAGAACTAGTTGAAACAAGGCCAGGAGATTGTTCTTTTCAATCACAAATATTGCACTGCATTCATGTTAGTCTCTTGTGTGTTCAACATAATCCAGAGGACAGGCCTGGAATGTCATCTGTTCTGCTAATGTTAGTGAGTGAGTTTGAACTGCCTGAGCCAAAACAGCCAGGTTTCTTTGCAAAGGATTCAGGGGAAGCTGATTCATCCACAAGTAACATGCAACTGAGTTCAACAAGTGAAATAACCATTACCCTTTTAGAAGCCAGATGA 2001 0.4013 MKFGLDLRTGLNRKLTAWKSVDDPSPGDFSFSMVLHNYPDAYMIKDGKKYYRSGPWNGLHSSGSPQVRSNPIYDYKFVFNKDELYYTYSMKNSSSISRIVLDGTNYVRRRYMWIESDKRWQTYTSVPLDLCDTYAICGAYGSCVITDSPVCQCLKGFKAKSPKAWNSMDWSHGCVRIKPLSCKDKEKDGFAKISGLKVPDTTHSWLDQTIGLKECRAKCLNNCSCMAYVNSDVRGKGSGCALRFSDLIDLRQLSAGGQDLYVRMDASELAEVEVSHKKDRVLVAVIIPLAIAAVSGILISGGCYKKKSRKKVKEKLSFDMQGDQNSRMLVDDMDLPVFGLSTIAKATSNFAIMNKIGEGGFGPVYKGMLEDGPEIAVTRLSASSGQGINEFKNEVKLIAKLQHRNLVKLLGCCIEEEEKMLVYEYMPNSSLDSFIFDQQRSELLDWLKRFNIICGIAKGLLYLHQDSRPRIIHRDPKASNVLLDNELNPKISDFGMAGIFGGDQNEVNTKRIVGAYGYMAPEYASDGHFSVKSDVFSFGVLLLEIISGKRSRGYYNQNTSHNLIGHAWKLWKEGMPLELVETRPGDCSFQSQILHCIHVSLLCVQHNPEDRPGMSSVLLMLVSEFELPEPKQPGFFAKDSGEADSSTSNMQLSSTSEITITLLEAR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc447g00003 666 ProSiteProfiles EGF-like domain profile. 127 163 IPR000742 -
Stsc447g00003 666 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 629 - -
Stsc447g00003 666 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 314 425 - -
Stsc447g00003 666 Pfam S-locus glycoprotein domain 51 160 IPR000858 GO:0048544
Stsc447g00003 666 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 1 611 - -
Stsc447g00003 666 ProSiteProfiles PAN/Apple domain profile. 182 266 IPR003609 -
Stsc447g00003 666 Gene3D Transferase(Phosphotransferase) domain 1 426 628 - -
Stsc447g00003 666 CDD PAN_AP_plant 179 263 - -
Stsc447g00003 666 Pfam Domain of unknown function (DUF3403) 625 666 IPR021820 GO:0004674
Stsc447g00003 666 Gene3D Hepatocyte Growth Factor 182 262 - -
Stsc447g00003 666 Pfam Protein tyrosine and serine/threonine kinase 352 618 IPR001245 GO:0004672|GO:0006468
Stsc447g00003 666 Gene3D Phosphorylase Kinase; domain 1 310 425 - -
Stsc447g00003 666 SUPERFAMILY Protein kinase-like (PK-like) 332 621 IPR011009 -
Stsc447g00003 666 ProSiteProfiles Protein kinase domain profile. 350 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc447g00003 666 Pfam PAN-like domain 182 250 IPR003609 -
Stsc447g00003 666 CDD STKc_IRAK 356 621 - -
Stsc447g00003 666 SMART ntp_6 185 264 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc447g00003 Stsc-Chr447 24424 27406 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc447g00003 275 635 Receptor kinase-like Gene Family AT4G23230 51.381 1.01e-124 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc447g00003 PK_Tyr_Ser-Thr 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc447g00003 - - gmx:100778155 1056.2