Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc447g00001 ATGGCAGAAGATCAATTTCAGGCAAGTGGCAACTGGTGGGAGAATCCAGCTATTAGGAACAATTGGCAGCAACAACAAGAAGAATCAGATCACATGATCAAGCCAACAAGGGTTTCTTTGGATTCCTCGGTTGGCGGCGACGGGGGCGGTGGAGGTTCTCCTTCTGTGGTGTTTCATGACCCACAGAAGCTGCAACCTCCGGAATCCACCGCCGCCACTTCTTCCACTGACCCCAACTTGCACTTCATGGCTTTAGGCCTCTCTTCTCCACCCATCGATTGGAATCAACAACCATCTTTCTTACGCGGAGAGAAGGGCGGAGATAACAGCTTCAGAGCGATGCTACAAGAGGAGGGCGGCGGCGGCATGGGGTTGTCAGCACAACAAGTTCATCATCAATGGAGATCACCGGAAAACGAATTCAAGAACAACAGAGGCTTCTGTTTGGAGCAAAACCAATTCAGTCCTCAATATAGCTCTGGTGACAGCACAGTGACAAGCCAACAAGGATTCCACCATCACCAAAACATGGATCATTCTGCAGTTCTTTATGGTAGCCCTTCATCAATCTTACAAGGACTATTAGGACCTGATCATCATCATCATAATACTAATTTTTCATATCCAACATCAAACTATGGGTTGAGTTCTTCTAGTAGCAATGAGTTTGTGCCTTCTTCTTCTTCTTCTAATTGGTCTAATAATAACAATAATAAGGTGCCTCAGTTCTTGAGAGGCTCACCACCAAAACAGTTATCAAATTCTTCATCATCTTCACCAATAACCACATCAAACACTAGTTTGCATTTCACCAACAACGCTCCCTTTTGGAACGCTGCTGCTGCTGCTTCTGATTCTAAAGATGTTAGGTCTTCTTCTACCTTCTTCCCTAATTCATTGCAGCCACCATTCTTCACTGCTCCAAGCTTTGATGTCCAATCAAAGAATATGAGTGAAATGAGGGATTCAGGTGCAGTGGTGAAGAAAAGTGGGAGTGAGGGAACACCAAAAAGGCCTCGGAACGAAACTACCCCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTAGTGTCGCCTTTTGGAAAGACTGATACTGCCTCAGTGTTATCTGAAGCAATTGAATACATCAAATTCCTTCATGAACAGGTCACTGTTTTGAGTACCCCGTATATGAAAAGTGGAGCTCCTATACAGATTCAACAGAGTTCCGGTAAATCTAAGGAAGGTGAGGGTCCAAAACAAGATCTTAGAAGCCGAGGGTTATGCTTGGTGCCAGTTTCAAGCACATTTCCAATGACTCATGAAACCACAGTTGATTTTTGGACACCAACATTTGGAGGAGGATCAAGATAG 1389 0.4464 MAEDQFQASGNWWENPAIRNNWQQQQEESDHMIKPTRVSLDSSVGGDGGGGGSPSVVFHDPQKLQPPESTAATSSTDPNLHFMALGLSSPPIDWNQQPSFLRGEKGGDNSFRAMLQEEGGGGMGLSAQQVHHQWRSPENEFKNNRGFCLEQNQFSPQYSSGDSTVTSQQGFHHHQNMDHSAVLYGSPSSILQGLLGPDHHHHNTNFSYPTSNYGLSSSSSNEFVPSSSSSNWSNNNNNKVPQFLRGSPPKQLSNSSSSSPITTSNTSLHFTNNAPFWNAAAAASDSKDVRSSSTFFPNSLQPPFFTAPSFDVQSKNMSEMRDSGAVVKKSGSEGTPKRPRNETTPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLSTPYMKSGAPIQIQQSSGKSKEGEGPKQDLRSRGLCLVPVSSTFPMTHETTVDFWTPTFGGGSR 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc447g00001 462 CDD bHLH_AtbHLH_like 348 399 IPR045239 -
Stsc447g00001 462 Gene3D - 352 409 IPR036638 GO:0046983
Stsc447g00001 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
Stsc447g00001 462 MobiDBLite consensus disorder prediction 408 430 - -
Stsc447g00001 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 407 IPR036638 GO:0046983
Stsc447g00001 462 MobiDBLite consensus disorder prediction 224 265 - -
Stsc447g00001 462 MobiDBLite consensus disorder prediction 1 29 - -
Stsc447g00001 462 FunFam Transcription factor bHLH123 family 352 414 - -
Stsc447g00001 462 MobiDBLite consensus disorder prediction 1 76 - -
Stsc447g00001 462 SMART finulus 353 397 IPR011598 GO:0046983
Stsc447g00001 462 MobiDBLite consensus disorder prediction 319 348 - -
Stsc447g00001 462 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 191 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc447g00001 Stsc-Chr447 2357 6652 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc447g00001 102 462 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 46.000 4.07e-73 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc447g00001 - - ahf:112772433 765.763