Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc43g00009 ATGGACTACACCACTTGGCCTGAATTTCAGCATAACCAAACCCTAAACCCAACACTTCCCTCTTCATCTTCATTTTATTCATACTCATACCCTCCTCTTCCATCTTCATCATCGTACACTCCCAATTTCACCCCTTACCCCCAAAACCCTAACCCTTCTTCTTCAATTCCTCCCAACACTGTTTTAGAACCTGTGGTTAACCCTCCGGGTGTTGATTCCTATGCTCCCCCATTGCCATTGCCAACAACCCAAGTTGTTGGTGGTTATGAACAAGTTCTTCCCCAAAATTACTCATACACACAAACCCAAATTGTGGGTCATGACCCTAATTCATTGGTGGCTTCTTCTGGGTACTACTATGATCCCAATGCTCAAAATTGGGGTGATACTGCTAGAGAAGCTGTTAGGCAATATGGTTCTGACCCTCTTGCATATGGAGATGTGATCTCTATGGGATCAAATGGCACAGAACAGTTGGCTATTGCAAATACTAATCCTGCTGCATGGTGGACCAATACAGCTACGCAAGTTCAAGCACAAGTGCAATCGCAAGCGCAACCTCTTGGCAATAACAAATGGAAGCAGCTGCCGAAGAAGAAACCTAAAACTATGAATGTCCAACCTGCATATTGCGAAGTTTGCAAGATAGATTGCACCAGCAAGGAGGTACTGGATCAACATAAATTAGGAAAGAAGCACAAGAAGAACGTAGAGAAACTAAGAGAGTTATTAAGACCACCCCATCCGCAAGCATCTAATCCGGTTATAGGACTGCAATTGTGGAATAAGAGTAAGAGGAAATCAATTGAAACTCCAGAGGATTTGGAGAAGAAGAAGAAGAAGGTCCTTGAAGGAGGAGCAGCAGCTGAAGCAGTTAAAGTATGTTCTATATGTAATGTGGTATGTAATAGTGAAACAGTATATAATTTCCACCTTGCTGGTCAAAAGCATGCTGCTATGGTGAAGAAAGCATATGAAAAAATACAATCCAATGCCAAATGA 1002 0.4232 MDYTTWPEFQHNQTLNPTLPSSSSFYSYSYPPLPSSSSYTPNFTPYPQNPNPSSSIPPNTVLEPVVNPPGVDSYAPPLPLPTTQVVGGYEQVLPQNYSYTQTQIVGHDPNSLVASSGYYYDPNAQNWGDTAREAVRQYGSDPLAYGDVISMGSNGTEQLAIANTNPAAWWTNTATQVQAQVQSQAQPLGNNKWKQLPKKKPKTMNVQPAYCEVCKIDCTSKEVLDQHKLGKKHKKNVEKLRELLRPPHPQASNPVIGLQLWNKSKRKSIETPEDLEKKKKKVLEGGAAAEAVKVCSICNVVCNSETVYNFHLAGQKHAAMVKKAYEKIQSNAK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc43g00009 333 MobiDBLite consensus disorder prediction 1 21 - -
Stsc43g00009 333 Gene3D Classic Zinc Finger 194 243 - -
Stsc43g00009 333 SMART ZnF_U1_5 290 324 IPR003604 GO:0003676|GO:0008270
Stsc43g00009 333 SMART ZnF_U1_5 206 240 IPR003604 GO:0003676|GO:0008270
Stsc43g00009 333 MobiDBLite consensus disorder prediction 37 62 - -
Stsc43g00009 333 PANTHER ZINC FINGER PROTEIN 385B-LIKE 111 327 - -
Stsc43g00009 333 SUPERFAMILY beta-beta-alpha zinc fingers 193 241 IPR036236 -
Stsc43g00009 333 SUPERFAMILY beta-beta-alpha zinc fingers 292 325 IPR036236 -
Stsc43g00009 333 Pfam Zinc-finger of C2H2 type 294 317 - -
Stsc43g00009 333 Pfam Zinc-finger of C2H2 type 210 233 - -
Stsc43g00009 333 SMART c2h2final6 293 317 IPR013087 -
Stsc43g00009 333 SMART c2h2final6 209 233 IPR013087 -
Stsc43g00009 333 Gene3D Classic Zinc Finger 267 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc43g00009 Stsc-Chr43 37645 39446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc43g00009 211 333 C2H2 Transcription Factor Family AT5G61190 30.405 2.75e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc43g00009 - - ahf:112797844 498.819