Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc439g00004 ATGTCTCGGCCGCTACTTGGCGTGGTTGGCGATGAGGAAGGCCAGGAGAGCCATGTGACTCTCTTGGGGTCTTCCTCATCCAGCATGGAAAGTGTGAATTGTCTGAACAGCTCGAAACTGAAGGAGCGAAACTACATGGGATTGTCTGATTCTTCTTCTGTGGACAGCTCTGTTCCGCCTTTCTCAGATGAGACTAAAAGCAATCTGAACCTCAAAGCTACTGAGCTGAGGCTGGGGCTTCCAGGATCTCAGTCTCCTGAAAGAGACTCGGATCTTTGCTTGCGGAGTTCAACTCAATTCGATGAGAAACCTTTGTTTCCTTTGCGTCCTGCGACAGATGATCATCGTTCCTCTTCGAAGCCTGTTGTTTTGGGCAACAAAAGAGGGTTCTCGGATGCAATGAACGGGTTCTCTGAGGAGAAATTTCTTGTTAGTTCGGACGCCAATCCAATATTGCCATCTAGGCCTTCACCTAACGCAGGATTGAAATCAAGCTCTATGCTTGAGAATGCTGCGGCTCAGCAAACCAAAGCCAAAGAAGTAGCAACATCCAAGGTGGGACTTGATAGGCCTCATGCTGACAATGAAACCAGGCCAAGCCTTAATGATTCCGCTGTGAATAATAATAGCAGTGCACCAGCTCCAAAGGCACAGGTTGTAGGATGGCCTCCTATAAGATCATTTAGGAAAAATTCTTTGGCTACTACTTCGAAGAATGCTGAAGAAGTAGATGGAAAAATGGCTTCCGGTGCACTGTTTGTGAAGGTCAGCATGGATGGAGCACCATACTTAAGAAAAGTGGACTTGAAGAATTACTCTGCGTATCCGGAACTTTCTTCTGCTCTGGAGAAGATGTTCAGCTGCTTCACCATTGGTCAATGTGGATCTCACGGAAATCTTGGTAAGGAGATGATGAGTGAAACTGAGCTGAAGGATCTGCTTCATGGATCAGAATATGTTCTTACTTACGAGGATAAAGACAACGACTGGATGCTAGTGGGTGATGTTCCCTGGGAAATGTTTATTGAAACATGCAGGAGGCTGAGGATCATGAAGGGAGCTGATGCCATTGGACTAGCTCCAAGAGCCGTCGAGAAAAGCAAAAGCAGGAACTAG 1116 0.4668 MSRPLLGVVGDEEGQESHVTLLGSSSSSMESVNCLNSSKLKERNYMGLSDSSSVDSSVPPFSDETKSNLNLKATELRLGLPGSQSPERDSDLCLRSSTQFDEKPLFPLRPATDDHRSSSKPVVLGNKRGFSDAMNGFSEEKFLVSSDANPILPSRPSPNAGLKSSSMLENAAAQQTKAKEVATSKVGLDRPHADNETRPSLNDSAVNNNSSAPAPKAQVVGWPPIRSFRKNSLATTSKNAEEVDGKMASGALFVKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQCGSHGNLGKEMMSETELKDLLHGSEYVLTYEDKDNDWMLVGDVPWEMFIETCRRLRIMKGADAIGLAPRAVEKSKSRN 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc439g00004 371 SUPERFAMILY CAD & PB1 domains 247 352 - -
Stsc439g00004 371 FunFam Auxin-responsive protein 246 363 - -
Stsc439g00004 371 MobiDBLite consensus disorder prediction 150 181 - -
Stsc439g00004 371 MobiDBLite consensus disorder prediction 198 215 - -
Stsc439g00004 371 ProSiteProfiles PB1 domain profile. 251 353 IPR000270 GO:0005515
Stsc439g00004 371 Gene3D - 246 365 - -
Stsc439g00004 371 MobiDBLite consensus disorder prediction 148 221 - -
Stsc439g00004 371 Pfam AUX/IAA family 74 362 IPR033389 -
Stsc439g00004 371 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 69 357 IPR003311 GO:0005634|GO:0006355
Stsc439g00004 371 MobiDBLite consensus disorder prediction 47 66 - -
Stsc439g00004 371 MobiDBLite consensus disorder prediction 183 197 - -
Stsc439g00004 371 MobiDBLite consensus disorder prediction 1 30 - -
Stsc439g00004 371 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc439g00004 Stsc-Chr439 15141 18615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc439g00004 265 356 B3 DNA Binding Superfamily AT1G19220 31.522 1.72e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Stsc439g00004 AUX_IAA 3.9e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc439g00004 K14484 - gmx:100815447 581.252